Peptide vaccine for prevention and immunotherapy of dementia of the alzheimer&#39;s type

ABSTRACT

The present disclosure is directed to individual Aβ peptide immunogen constructs, peptide compositions comprising these Aβ peptide immunogen constructs and mixtures thereof, pharmaceutical compositions including vaccine formulations comprising these Aβ peptide immunogen constructs, with the individual Aβ peptide immunogen constructs having the N-terminus of the Aβ peptide as the B cell (B) epitopes linked through spacer residue(s) to heterologous T helper cell (Th) epitopes derived from pathogen proteins that act together to stimulate the generation of highly specific antibodies directed against the N-terminus of the Aβ peptide offering protective immune responses to patients at risk for, or with, Alzheimer&#39;s Disease.

FIELD OF THE INVENTION

This disclosure relates to a peptide-based vaccine and formulations thereof for prevention and immunotherapy of dementia of the Alzheimer's type.

BACKGROUND OF THE INVENTION

Alzheimer's Disease (AD) is the most common form of dementia, a chronic, neurodegenerative disorder characterized by a loss of cognitive ability, severe behavior abnormalities, and death. It affects roughly 10% of the population over age 65 and 40% of those over age 85. Unlike other leading causes of death such as heart disease, cancer and stroke, mortality from Alzheimer's disease will escalate dramatically over the next two to three decades as advances in medical technology permit more individuals to reach the age of risk for dementias. In the United States, 7-8% of all medical costs are related to dementia today. There are currently 2.5 to 4.0 million patients living with AD in the U.S. and 17 to 25 million worldwide. There is no definitive treatment or cure for this devastating disease.

As originally defined by Alois Alzheimer (1907), two microscopic deposits, i.e., the neurofibrillary tangle and the senile amyloid plaque, remain the pathologic hallmarks of the disease. The definitive diagnosis of Alzheimer's disease has traditionally required either biopsy or postmortem histopathology. With the recent introduction of ligands labeling amyloid plaques with positron emitting isotopes, combined with cognitive testing and measurements of specific molecules in the spinal fluid, more definitive diagnosis of this disease has now become available without histopathology.

Considerable evidence has been accumulated suggesting that the β-amyloid (Aβ) peptide—the major component of senile amyloid plaques—plays an important role in AD. An updated review on the β-amyloid (Aβ) peptide (as of Feb. 13, 2013) is available from Wikipedia at http://en.wikipedia.org/wiki/Beta_amyloid#cite_note-wales2010-41 which link is included here by reference. Successful disease-modifying therapy for AD is likely to include products that affect the deposition of β-amyloid in the brain. A recent publication by Morgan, D. on “Immunotherapy for Alzheimer's Disease” (Morgan D. J Int Med 2011; 269:54-63), which is relevant to this invention is included by reference as a review of the field.

The initiating factor, necessary but not sufficient for Alzheimer's disease, is the accumulation of amyloid aggregates consisting of the Aβ peptide. The genetics of familial forms of Alzheimer's disease and Down's syndrome cases (which result in precocious Alzheimer pathology) have overproduction of a longer C-terminal form of the Aβ peptide (42 amino acids in length) as a common element. This Aβ₁₋₄₂ peptide is prone to form beta sheet structures and aggregate into oligomers and fibrils. These amyloid deposits may be present a decade or longer in the brain prior to the initiation of the cognitive symptoms of the disorder. A second step in the pathogenesis of the disease is the formation of intraneuronal neurofibrillary tangles from hyperphosphorylated microtubule binding protein tau. Other neurodegenerative disorders can also be formed by the tau pathology in the absence of amyloid deposits, but they differ from Alzheimer's both in clinical presentation and in the location of the pathology regionally in the brain. In tau transgenic mouse models, the tau deposits can be precipitated by intracranial injection of amyloid or breeding with mice producing Aβ deposits. Moreover, interrupting the amyloid deposition with anti-Aβ immunotherapy can diminish the progression of tau pathology in mice expressing multiple transgenes. The tau pathology appears to be better correlated with cognitive status than the amyloid pathology, consistent with it being the more proximal cause of the mental dysfunction. By uncertain mechanisms, these pathologies result in the loss of synaptic function, synapses, and ultimately a loss of neurons leading to considerable brain atrophy.

There are multiple hypotheses regarding the mechanistic steps involved. The intermediate sized aggregates of amyloid and/or tau, referred to as oligomers, are considered a more direct cause of toxicity. Even in the earliest stages of the disorder, the “mild cognitive impairment” (MCI) phase, there appears to be considerable accumulation of plaque and tangle pathology, and neuron loss. These observations suggest that treating the disorder at the earliest possible stages, much as is done with cardiovascular disease, will be essential to controlling Alzheimer's disease.

In 1999, a vaccine approach was found to reduce amyloid deposits in transgenic mice overproducing the amyloid precursor protein. Thereafter, vaccines or passive immunotherapy targeting Aβ were found to rescue memory deficits in these mice. Aβ-specific antibodies, actively generated by the immune system or passively administered, consistently reduce plaque burden in different transgenic mouse models for Aβ-amyloidosis. Given the success of vaccination in animal models, and the lack of any alternative disease modifying therapy for Alzheimer's disease, a first clinical attempt to stimulate the immune system of AD patients to generate Aβ-antibody was initiated with a vaccine termed AN1792, which consisted of full length Aβ₁₋₄₂ peptide containing both B and T cell epitopes, aggregated into fibrils. About 60 patients were treated with one or more doses of the vaccine in a phase 1 safety trial. One of the initial observations was a variable antibody response, with many patient vaccines failing to generate detectable antibody titers against the target Aβ peptide antigen. This lack of immune response in many of the patients led to a change of vaccine formulation to include QS-21 as the adjuvant in an attempt to enhance the immunogenicity of the AN1792 vaccine formulation in the phase 2 safety and immunogenicity trial. The goal was to immunize patients to a preset antibody titer through multiple inoculations. However, the immunizations were halted within a short time of initiating the trial due to a small percentage of the patients (˜6%) developing aseptic meningoencephalopathy, an inflammatory reaction in the Central Nervous System (CNS). Two patients who developed these symptoms of CNS inflammation died with subsequent autopsies revealing a T cell infiltration of the CNS, apparent with signs of meningeal inflammation. It was concluded that the adverse response of the AN1792 vaccine formulation was an autoimmune reaction caused by the vaccine (Orgogozo J M, et al., Neurology 2003; 61:46-54). From an efficacy viewpoint, no differences in the rate of brain shrinkage by MRI or cognitive performance were observed between the vaccines and those receiving placebo vaccine.

Despite the AN1792 vaccine set back, the development of novel vaccine strategies and adjuvants against the Aβ peptide for immunotherapy of Alzheimer's disease has been an area of intense creativity. In most instances, the goal has been to develop B cell activation and antibody production, with minimal T cell involvement (at least against Aβ), due to the adverse events found in human trials with vaccines against the full length Aβ₁₋₄₂ peptide as shown in the AN1792 case.

Currently, aside from the product of this invention managed by the inventor and her team, there are four Phase I/II clinical trials of active immunization employing various vaccine designs and formulations targeting Aβ fragments. These trials include: ACC-001 (Elan Corporation Inc. and Wyeth) using as immunogen the Aβ₁₋₇ amino-terminal peptide fragment conjugated to a diphtheria toxoid protein; CAD106 (Immunodrug™; Cytos Biotechnology AG and Novartis Pharma AG) using as immunogen the Aβ₁₋₅ amino-terminal peptide fragment coupled to Qβ virus-like particle; V950 (Merck) using as immunogen Aβ amino-terminal peptides conjugated to ISCO-MATRIX; and GSK/Affiris using as immunogen Aβ peptide mimetics conjugated to carrier molecules. In addition, there are other vaccine approaches targeting Aβ as described in a review by Tabira T (Tohoku J Exp Med 2010; 220:95-106).

All vaccine designs and formulations targeting Aβ currently in human trials, as described above, suffer from weak immunogenicity with variable antibody response in that only from 30% to approximately 70% to 80% of patients receiving these vaccines developed antibodies towards the target Aβ peptide, which makes any further analysis of efficacy resulting from the vaccine generated anti-Aβ antibodies more complicated. Most of the vaccine designs are complicated, requiring conjugation of the very short Aβ peptide fragments to a large protein or viral particle like carrier, thus directing most of the antibody responses towards the undesired carrier rather than the short target peptides; complicated vaccine designs dictate extensive manufacturing procedures, thus difficult in quality control and not cost-effective. These vaccines are uncertain in their safety characteristics due to the potential Th1 activation property of the adjuvant and formulation used. In addition, as of this date, none of these vaccines has shown any clinical efficacy such as improvement in cognition functions in patients receiving the vaccines.

In developed countries, AD is one of the most costly diseases to society. New therapies must be found to prevent, delay the onset, or slow the progression of AD. Despite the promising findings of immunological interventions in mice for AD, a safe and efficacious human vaccine targeting Aβ for prevention and treatment of dementia of Alzheimer's type remains a challenge. In view of the limitations of vaccine designs and formulations currently in preclinical or clinical trials as discussed above, there is an unmet and urgent need for the development of a safe and efficacious vaccine formulation to provide broadly responsive immunotherapy for prevention and treatment of dementia of the Alzheimer's type. When such a vaccine formulation is successful against Alzheimer's pathology, it will become among the standard approaches to preventing the disease.

SUMMARY OF THE INVENTION

The present disclosure is directed to individual Aβ peptide immunogen constructs, peptide compositions comprising these Aβ peptide immunogen constructs and mixtures thereof, pharmaceutical compositions including vaccine formulations comprising these Aβ peptide immunogen constructs, with the individual Aβ peptide immunogen constructs having the N-terminus of the Aβ peptide as the B cell (B) epitopes linked through spacer residue(s) to heterologous T helper cell (Th) epitopes derived from pathogen proteins that act together to stimulate the generation of highly specific antibodies directed against the N-terminus of the Aβ peptide offering protective immune responses to patients at risk for, or with, Alzheimer's Disease.

In an embodiment, Aβ peptide immunogen constructs can comprise hybrid Aβ peptide having a B cell antigenic site between 10 to 14 amino acids in length from the amino terminus of the Aβ₁₋₄₂ peptide, e.g. Aβ₁₋₁₀, Aβ₁₋₁₂, Aβ₁₋₁₄, that is linked to a heterologous Th epitope derived from pathogenic proteins such as Measles Virus Fusion (MVF) protein (SEQ ID NO: 34) that act together to stimulate the generation of highly specific antibodies cross-reactive the full length Aβ₁₋₄₂ peptide (SEQ ID NO: 1) in the senile plaques. In other embodiments, Aβ peptide immunogen constructs contain hybrid peptide having a B cell antigenic site Aβ₁₋₁₄ peptide linked to heterologous Th epitopes derived from various pathogenic proteins (SEQ ID NOs: 33 to 47) capable of eliciting antibodies cross-reactive the full length Aβ₁₋₄₂ peptide in the senile plaques. Of the heterologous Th epitopes employed to enhance the B cell antigenic site Aβ₁₋₁₄ peptide, Th epitopes derived from natural pathogens Diphtheria Toxin (SEQ ID NO: 37), Plasmodium Falciparum (SEQ ID NO: 38), Cholera Toxin (SEQ ID NO: 40), and those idealized artificial Th epitopes derived from Measles Virus Fusion protein (MVF 1 to 5) and Hepatitis B Surface Antigen (HBsAg 1 to 3) in the form of either single sequence or combinatorial sequences (e.g. SEQ ID NOs: 34 and 41 to 47) are found of particular use in such B cell antigenicity enhancement through immunogenicity screening testing. In other embodiments, peptide compositions comprising a mixture of Aβ peptide immunogen constructs with heterologous Th epitopes derived from different pathogens are used to allow coverage of as broad a genetic background in patients leading to a higher percentage in responder rate upon vaccine immunization for the treatment and prevention of dementia of the Alzheimer's type. In an embodiment, Aβ peptide immunogen constructs (SEQ ID NOs: 62 and 63) with heterologous Th epitopes derived from MVF and HBsAg in a combinatorial form (SEQ ID NOs: 44 and 45) were mixed in an equimolar ratio for use in a vaccine formulation to allow for maximal coverage of the vaccine host population having diverse genetic background. Synergistic enhancement in Aβ peptide immunogen constructs was observed in the peptide compositions of this invention and the antibody response was mostly (>90%) focused on the desired cross-reactivity against the full length Aβ₁₋₄₂ without much, if any, directed to the heterologous Th epitopes employed for immunogenicity enhancement. This is in sharp contrast to the conventional protein or other biological carriers used for such peptide antigenicity enhancement. In another embodiment, highly purified Aβ peptide immunogen constructs (SEQ ID NOs: 64 and 65) with heterologous Th epitopes derived from MVF and HBsAg in a single sequence form (SEQ ID NOs: 46 and 47) were mixed optionally in an equimolar ratio for use in a vaccine formulation to allow for maximal coverage of the vaccine host population having diverse genetic background.

The present disclosure is also directed to pharmaceutical compositions including vaccine formulations for treatment and prevention of dementia of the Alzheimer's type. In some embodiments, pharmaceutical compositions comprising a stabilized immunostimulatory complex, which is formed through mixing a CpG oligomer with a peptide composition containing a mixture of the Aβ peptide immunogen constructs through electrostatic association, to further enhance the Aβ peptide immunogenicity towards the desired cross-reactivity with the full length Aβ₁₋₄₂ present in the senile plaques. In other embodiments, pharmaceutical compositions comprising a peptide composition of a mixture of the Aβ peptide immunogen constructs in contact with mineral salts including Alum gel (Alhydrogel) or Aluminum phosphate (Adjuphos) as adjuvant to form a suspension vaccine formulation was used for administration to vaccine hosts. In yet another embodiment, pharmaceutical compositions comprising a peptide composition of a mixture of the Aβ peptide immunogen constructs forming a stabilized immunostimulatory complex with CpG oligomers are, optionally, mixed with mineral salts, including Alum gel (Alhydrogel) or Aluminum phosphate (Adjuphos) as an adjuvant with high safety factor, to form a suspension vaccine formulation for administration to vaccine hosts.

The present disclosure also includes methods for treatment and prevention of dementia of the Alzheimer's type. The disclosed methods utilize pharmaceutical compositions including a suspension vaccine formulation comprising the Aβ peptide immunogen constructs of this invention, optionally forming a stable immunostimulatory complex with CpG oligomers, which are further supplemented, optionally, with mineral salts as adjuvant, for administration to patients at risk or with Alzheimer's Disease. In these embodiments, the pharmaceutical compositions that comprise the Aβ peptide immunogen constructs and the vaccine formulations derived thereof can elicit antibodies against the full length Aβ₁₋₄₂ peptide to inhibit, in vitro, fibril formulation, and reduce, in vitro, the cytotoxicity towards the neuronal cells, as illustrated by the PC12 cell line cells, mediated by the aggregated Aβ oligomers. In some embodiments, animals or patients receiving vaccine formulations derived from the Aβ peptide immunogen constructs developed significant antibodies against the full length Aβ₁₋₄₂ peptide and were found to pull such toxic Aβ peptide from the Central Nervous System into periphery as demonstrated in the elevated levels of Aβ₁₋₄₀ in the plasma and serum of the vaccine hosts.

In another aspect of the present invention, it was surprisingly found that the vaccine formulations comprising Aβ peptide immunogen constructs can be advantageously applied intramuscularly to warm-blooded animals, especially humans, suffering from dementia of the Alzheimer's type. In yet another aspect of the present invention, it provides a dosage form for intramuscularly administration of two Aβ peptide immunogen constructs (SEQ ID NOs: 64 and 65). The preferred dosage form for intramuscular injection is a vaccine formulation containing between 30 μg to 1000 μg/0.5 mL peptide immunogen constructs complexed with CpG oligomers supplemented with 0.5 mL mineral salts as the adjuvant, preferably between 100 μg to 400 μg/0.5 mL, and more preferably 300 μg/0.5 mL. The dosage form is stable for more than 2 years and can be kept at 2 to 8° C. until shortly before usage. The dosage form is administered preferably by intramuscular injection with a syringe to the warm-blooded animal, especially into the arm. For warming up of the dosage form, the dosage form can be kept at ambient temperature for about between 15 minutes and 45 minutes, e.g. 30 minutes. Preferably, before withdrawing drug substance, the vials are gently inverted several times for dispersion of potential subvisual particles.

In another aspect of the present invention, it was surprisingly found that the vaccine formulations comprising Aβ peptide immunogen constructs can be advantageously applied intramuscularly to warm-blooded animals, especially rhesus macaques and humans suffering from dementia of the Alzheimer's type to elicit highly specific antibodies mainly directed against the N-terminus of the Aβ peptide represented by Aβ₁₋₁₀ peptide with the amino acid “Aspartic Acid (D)” exposed on the outer part of the Aβ₁₋₄₂ peptide oligomers, aggregates or in senile plaques as demonstrated by fine epitope mapping studies. In yet another aspect of the present invention, it was surprisingly found that the vaccine formulations comprising Aβ peptide immunogen constructs can be advantageously applied intramuscularly to warm-blooded animals, especially rhesus macaques and humans suffering from dementia of the Alzheimer's type to elicit highly specific antibodies mainly directed against the N-terminus of the Aβ₁₋₄₂ peptide in all animals and all patients receiving such vaccine formulations, thus achieving a 100% antibody response rate, extremely rare in the vaccine development history. In yet another aspect of the present invention, it was surprisingly found that the vaccine formulations comprising Aβ peptide immunogen constructs of this invention can be advantageously applied intramuscularly to patients at age 60 or older and in the mild Alzheimer's Disease category clinically, with significant improvement in cognition scores (ADAS-Cog, ADCS-CGIC, MMSE), unprecedented since the immunotherapy of patients with Alzheimer's Disease was first explored.

In yet another aspect of the present invention, it relates to a method of prevention and treatment of dementia of Alzheimer's type in human patients comprising administering 30 μg to 750 μg, preferably 100 μg to 400 μg, more preferably about 300 μg, to human patients in need thereof about once every 12 weeks, preferably about once every 26 weeks, and in particular about once every 52 weeks, depending on the patient's antibody response directed at the full length Aβ peptide, after a priming with three injections at 0, 4, and 8 weeks after the initial immunization.

The usefulness of the vaccine formulations and the Aβ peptide immunogen constructs in the treatment of the above-mentioned disorders can be further confirmed in suitable clinical studies, e.g. those described in the Examples, e.g. applying a total of three dosages at 0, 4, and 12 weeks with each time applying 300 μg/0.5 mL/dose vaccine formulation for over 9 months period followed. There can be a follow up immunizations of once every three, six or 12 months according to antibody titers.

Suitable clinical studies are open label studies or in particular randomized, double-blind, placebo-controlled, parallel studies in patients at risk of Alzheimer's Disease or with symptoms of Alzheimer's Disease.

The present disclosure also provides a method for the low cost manufacture and quality control of Aβ peptide immunogen constructs, as well as a delivery system capable of protecting animals and patients at risk for or with Alzheimer's Disease.

In a further aspect, the present invention provides human monoclonal antibodies against Aβ₁₋₄₂ induced by patients receiving the vaccine formulations of the Aβ peptide immunogen constructs of this instant invention. An efficient method to make human monoclonal antibodies from B cells isolated from the blood of a human patient is described by Elisabetta Traggiai et al, in Nature Medicine 10, 871-875 (2004), which publication is included by reference.

REFERENCES

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BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 is a flow chart identifying the development process, from discovery to commercialization (industrialization), of a vaccine formulation according to a particular embodiment disclosed herein. The present disclosure includes peptide immunogen design, peptide composition design, vaccine formulation design, in vitro functional antigenicity design, in vivo immunogenicity and efficacy study design, dosing regimen design, and clinical protocol design summarized in this chart. Detailed evaluation for each of the steps, with pleasant and unpleasant surprises, leading to final success in commercialization of a highly safe and efficacious vaccine formulation based on rational designs is described further herein.

FIG. 2A illustrates the HPLC profile of a highly purified Aβ peptide immunogen construct (SEQ ID NO: 65) with elution time of 20 minutes.

FIG. 2B illustrates the HPLC profile of a highly purified Aβ peptide immunogen construct (SEQ ID NO: 64) with elution time of 21 minutes.

FIG. 2C is a Mass Spectrometry (MALDI-TOF) profile with a molecular weight measured at 3892.274 for Aβ peptide immunogen construct (SEQ ID NO: 65), which has a theoretical molecular weight of 3892.52, showing high precision of the molecular nature used as the active pharmaceutical ingredient in the UBI AD vaccine (UB-311) formulation.

FIG. 2D is a Mass Spectrometry (MALDI-TOF) profile with a molecular weight measured at 4374.568 for Aβ peptide immunogen construct (SEQ ID NO: 64), which has a theoretical molecular weight of 4374.07, showing high precision of the molecular nature used as the active pharmaceutical ingredient in the UBI AD vaccine (UB-311) formulation.

FIG. 2E illustrates the HPLC profiles of highly purified Aβ peptide immunogen constructs (SEQ ID NOs: 65 and 64) with elution times of 20 and 21 minutes, respectively. The two Aβ peptide immunogen constructs (SEQ ID NOs: 64 and 65) were extracted from a UB-311 vaccine formulation preparation after a storage at 2-8° C. over 3 years showing an expected HPLC profile with the elution time at an equal molar ratio as previously mixed illustrating the high precision nature of such a rationally design vaccine formulation.

FIG. 3A illustrates the HLA Class II binding motifs of Th peptide SEQ ID NO: 46 based on extensive literature search. Decision was made to use a combination of two Aβ peptide immunogen constructs (SEQ ID NOs: 64 and 65) to broaden the immune responses due to maximal coverage of the genetic background of patients receiving the vaccine.

FIG. 3B illustrates the HLA Class II binding motifs of Th peptide SEQ ID NO: 47 based on extensive literature search. Decision was made to use a combination of two Aβ peptide immunogen constructs (SEQ ID NOs: 64 and 65) to broaden the immune responses due to maximal coverage of the genetic background of patients receiving the vaccine.

FIG. 4 illustrates the Kinetics of antibody response over a 26-week period in guinea pigs to vaccine formulations incorporating varying amounts (from 0, 10, 30, 100 to 300 μg per 0.5 mL dose) of Aβ peptide immunogen constructs (SEQ ID NOs: 64 and 65) in combination with a fixed amount of mineral salts.

FIG. 5A illustrates a schematic for the preparation of stable peptide/CpG immunostimulatory complexes through electrocharge association/neutralization between the Aβ peptide immunogen constructs and CpG oligodeoxynucleotide (ODN).

FIG. 5B illustrates a schematic subsequent to FIG. 5A for the preparation of mineral salt-based vaccine suspension containing such immunostimulatory complexes and aluminum-based mineral salt.

FIG. 6 illustrates the Kinetics of antibody response over a 10-week period in baboons of vaccine formulations at 300 μg/0.5 mL/dose of Aβ peptide immunogen constructs in the presence of different adjuvants (Alhydrogel/NaCl+CpG ODN; Adjuphos/NaCl+CpG ODN; and NaCl+CpG ODN).

FIG. 7: Immunogenicity study in guinea pigs of UBI AD vaccine comprising Aβ peptide immunogen constructs (SEQ ID NOs: 64 and 65 at equimolar ratio) after a 2-year storage at 2 to 8° C. The UBI AD vaccine remained highly immunogenic and stable after a standard prime and boost (3 wpi) protocol.

FIG. 8A: illustrates cerebral vessels from a human AD brain are not immunohistochemically stained with IgG fractions from preimmune baboon sera.

FIG. 8B: illustrates cerebral vessels from a human AD brain show immunohistochemical staining with purified IgG from hyperimmune sera from baboons immunized with an equimolar ratio of the Aβ peptide immunogen constructs SEQ ID NOs: 62 and 63.

FIG. 8C: illustrates cerebral vessels from a human AD brain are not immunohistochemically stained with the purified IgG from hyperimmune sera described for FIG. 8B that was preincubated with Aβ₁₋₁₄ peptide. This figure shows that preincubation with the Aβ₁₋₁₄ peptide absorbed out all immunoreactivity of cerebral vessels by the purified IgG from the hyperimmune sera, demonstrating the high specificity of the hyperimmune sera by vaccination with a vaccine formulation comprising Aβ peptide immunogen constructs (SEQ ID NOs: 62 and 63).

FIG. 8D: illustrates cerebral vessels from a human AD brain show immunohistochemical staining with purified IgG from hyperimmune sera described for FIG. 8B that was preincubated with a non-relevant peptide.

FIG. 8E: illustrates amyloid plaques from a human AD brain are not immunohistochemically stained with IgG fractions from preimmune baboon sera.

FIG. 8F: illustrates amyloid plaques from a human AD brain show immunohistochemical staining with purified IgG from hyperimmune sera from baboons immunized with an equimolar ratio of the Aβ peptide immunogen constructs SEQ ID NOs: 62 and 63.

FIG. 8G: illustrates amyloid plaques from a human AD brain are not immunohistochemically stained with the purified IgG from hyperimmune sera described for FIG. 8B that was preincubated with Aβ₁₋₁₄ peptide. This figure shows that preincubation with the Aβ₁₋₁₄ peptide absorbed out all immunoreactivity of cerebral vessels by the purified IgG from the hyperimmune sera, demonstrating the high specificity of the hyperimmune sera by vaccination with a vaccine formulation comprising Aβ peptide immunogen constructs (SEQ ID NOs: 62 and 63).

FIG. 8H: illustrates amyloid plaques from a human AD brain show immunohistochemical staining with purified IgG from hyperimmune sera described for FIG. 8B that was preincubated with a non-relevant peptide.

FIG. 9: Immunogenicity study of the UBI AD vaccine in adult baboons, P. anubis. (Part A) Individual baboons immunized at 0, 3, 6 weeks (arrows) with 300 μg per dose of the UBI AD vaccine formulated in mineral salts (♦, ▴, , ▪) and assayed for anti-Aβ antibody titers by ELISA. Note that three of four baboons generated anti-Aβ antibody titers after the first immunization. (Part B) Individual baboons immunized after a 72 week rest period, at 78, 81 and 104 weeks (arrows), with 300 μg (low dose, , ▪) or 1200 μg (high dose, ♦, ▴) of the UBI AD vaccine formulated in mineral salts and assayed for anti-Aβ antibody titers. Note that all four baboons developed strong anti-Aβ antibody responses after a single vaccine boost. At the end of the 2-year study period, all four baboons remained healthy and active.

FIG. 10A: illustrates effect of UBI AD vaccine in a prevention mode on brain morphology of the cortex from young transgenic mice overexpressing hAPP751. Brain samples obtained from transgenic mice treated with adjuvant alone, Responders from mice treated with UBI AD vaccine, and the non-treated mice were analyzed for amyloid beta plaque load and found reduced number of plaques and “lower mean plaque size per um²” in UBI AD treated Responder mice when compared to the untreated and those treated with adjuvant alone.

FIG. 10B: illustrates effect of UBI AD vaccine in a prevention mode on brain morphology of the hippocampus from young transgenic mice overexpressing hAPP751. Brain samples obtained from transgenic mice treated with adjuvant alone, Responders from mice treated with UBI AD vaccine, and the non-treated mice were analyzed for amyloid beta plaque load and found reduced number of plaques and “lower mean plaque size per um²” in UBI AD treated Responder mice when compared to the untreated and those treated with adjuvant alone.

FIG. 11A: illustrates effect of UBI AD vaccine in a preventative mode on amyloid β-peptide (Aβ₁₋₄₂) concentration in brain tissue extracts from young transgenic mice overexpressing hAPP751. Small protofibrils were obtained from the Triton X-100 fraction of biochemical extractions of the brain tissues. Transgenic Responder mice treated with UBI AD vaccine were found to have far less protofibrils when compared to the brain tissue extractions resulting from the Triton X-100 fractions from untreated transgenic mice.

FIG. 11B: illustrates effect of UBI AD vaccine in a preventative mode on amyloid β-peptide (Aβ₁₋₄₂) concentration in brain tissue extracts from young transgenic mice overexpressing hAPP751. Large oligomers and fibrils were obtained from the SDS detergent fraction of biochemical extractions of the brain tissues. Transgenic Responder mice treated with UBI AD vaccine were found to have far less large oligomers and fibrils when compared to the brain tissue extractions resulting from SDS fractions from untreated transgenic mice.

FIG. 12: illustrates mean anti-Aβ₁₋₁₄ antibody titers following UBI AD vaccine treatment in patients. Two sets of data were plotted with one from data obtained between weeks 0 and 24/26 (n=17, solid line) during the trial period and the other from data obtained including the follow-up observational period (n=13, dashed line) between weeks 0 and 48. The Aβ₁₋₁₄ antibody log₁₀ titers decreased over time but remained positive in all subjects at the end of study (week 48).

FIG. 13: illustrates mean ADAS-Cog (solid circle), MMSE (open circle) scores and anti-Aβ₁₋₁₄ antibody titers (solid bars) between weeks 0 and 48 in Subjects >60 years of age and with baseline MMSE score >20 undergoing the UBI AD vaccine trial.

FIG. 14: illustrates a change in the mean ADAS-Cog scores over a 12-month period between UBI AD vaccinees with mild AD and older than 60 years of age (solid circle) and those from a placebo group with mild AD in a Tarenflurbil trial (solid triangle). Six subjects >60 years of age with mild AD showed improvement with decreased scores when evaluated at 4, 6, 12 months (−3.00 change) after immunization with UBI AD vaccine at weeks 0, 4, 12 in comparison to subjects with mild AD who received a placebo in the Tarenflurbil trial (Green et al., JAMA 2009; 302(23):257-2564) and showed a poor response with increased scores (3.81 change) over the same time period.

FIG. 15A: illustrates immunogenicity study in Patients receiving UBI AD vaccine in a Phase I Clinical Trial. Serum samples from all 19 individuals with mild to moderate Alzheimer's disease were evaluated pre-treatment (V1/V2; light gray bars) and post-immunization at week 16 (V7; black bars) for anti-Aβ antibodies. Antibody titers (log₁₀) to the Aβ₁₋₂₈ monomer were evaluated by ELISA test using serum samples collected at pre-treatment visit and week 16, 4 weeks after the last of three vaccinations of UBI AD vaccine delivered at 0, 4, and 12 weeks. Little or no antibody reactivity was found in pre-treatment samples (thus seeing no bars in most of the paired data comparison). All individuals generated high titer anti-Aβ antibodies after treatment to the Aβ₁₋₂₈ monomer that are localized at the N-terminus of Aβ peptide as illustrated in FIG. 16.

FIG. 15B: illustrates immunogenicity study in Patients receiving UBI AD vaccine in a Phase I Clinical Trial. Serum samples from all 19 individuals with mild to moderate Alzheimer's disease were evaluated pre-treatment (V1/V2; light gray bars) and post-immunization at week 16 (V7; black bars) for anti-Aβ antibodies. Antibody titers (log₁₀) to the Aβ₁₋₄₂ monomer were evaluated by ELISA test using serum samples collected at pre-treatment visit and week 16, 4 weeks after the last of three vaccinations of UBI AD vaccine delivered at 0, 4, and 12 weeks. Little or no antibody reactivity was found in pre-treatment samples (thus seeing no bars in most of the paired data comparison). All individuals generated high titer anti-Aβ antibodies after treatment to the Aβ₁₋₄₂ monomer that are localized at the N-terminus of Aβ peptide as illustrated in FIG. 16.

FIG. 15C: illustrates immunogenicity study in Patients receiving UBI AD vaccine in a Phase I Clinical Trial. Serum samples from all 19 individuals with mild to moderate Alzheimer's disease were evaluated pre-treatment (V1/V2; light gray bars) and post-immunization at week 16 (V7; black bars) for anti-Aβ antibodies. Antibody titers (log₁₀) to the Aβ₁₋₄₂ oligomers were evaluated by ELISA test using serum samples collected at pre-treatment visit and week 16, 4 weeks after the last of three vaccinations of UBI AD vaccine delivered at 0, 4, and 12 weeks. Little or no antibody reactivity was found in pre-treatment samples (thus seeing no bars in most of the paired data comparison). All individuals generated high titer anti-Aβ antibodies after treatment to the Aβ₁₋₄₂ oligomers that are localized at the N-terminus of Aβ peptide as illustrated in FIG. 16.

FIG. 16: illustrates epitope Mapping for Fine Specificity Analysis at the N-terminus of Aβ₁₋₄₂ by sera from immunized patients with Alzheimer's disease. The predominant epitope recognized by antibodies in the serum samples collected at week 16 from patients immunized with UBI AD vaccine is specific to the Aβ₁₋₁₀ peptide. This graph represents a typical positive epitope-mapping response from one individual (P210) who received three doses of UBI AD vaccine and generated an anti-Aβ antibody log₁₀ titer of 2.198 to Aβ₁₋₁₄ peptide. Serum was diluted 1:50 for epitope mapping. Peak height indicates the half maximal inhibitory concentration (IC₅₀) of the subject's sample to different 10-mer Aβ peptides (SEQ ID NOs: 6, 8 to 30). A single major peak is observed, corresponding to immunoreactivity highly specific to the amino-terminal Aβ sequence, SEQ ID NO: 6 (Aβ₁₋₁₀: DAEFRHDSGY).

DETAILED DESCRIPTION OF THE INVENTION

The present disclosure is directed to individual Aβ peptide immunogen constructs, peptide compositions comprising these Aβ peptide immunogen constructs and mixtures thereof, pharmaceutical compositions comprising these peptide compositions in a vaccine formulation, with the individual Aβ peptide immunogen constructs having N-terminus of Aβ peptide (Aβ₁₋₁₀ to Aβ₁₋₁₄) as B cell (B) epitopes linked through spacer residue(s) to heterologous T helper cell (Th) epitopes from proteins of pathogens that act together to stimulate the generation of specific antibodies directed against the N-terminus of the Aβ₁₋₄₂ peptide offering protective immune responses to patients at risk for, or with, Alzheimer's Disease.

The present disclosure also includes methods for treatment and prevention of Alzheimer's Disease. The disclosed methods utilize pharmaceutical compositions including a suspension vaccine formulation comprising the Aβ peptide immunogen constructs forming, optionally, a stable immunostimulatory complex with highly negatively charged oligonucleotide such as CpG oligomers through electrostatic association, which complexes are further supplemented, optionally, with mineral salts as adjuvant, for administration to patients at risk for, or with, Alzheimer's Disease. The present disclosure also includes methods utilizing vaccine formulations in particular to dosage regimens, modes of and dosage forms for the administration of the vaccine formulations comprising the Aβ peptide immunogen constructs for the prevention and treatment of patients at risk for, or with, Alzheimer's Disease.

The present disclosure also provides a method for the low cost manufacture and quality control of Aβ peptide immunogen constructs and a vaccine formulation capable of protecting animals and patients at risk for, or with, Alzheimer's Disease. The present invention relates to a stabilized immunostimulatory complex and a method for preparing the stabilized immunostimulatory complex. More specifically, the present invention provides stabilized synthetic immunostimulatory complexes comprising the Aβ peptide immunogen constructs and highly negatively charged oligonucleotide such as CpG oligomers that are useful in vaccine delivery systems with improved immune responses in vivo. These immunostimulatory complexes are also useful for preparing vaccine formulations designed to function as a depot for controlled release.

In a further aspect, the present invention provides human monoclonal antibodies against Aβ₁₋₄₂ induced by B cells isolated from the blood of a patient who previously received the vaccine formulations of the Aβ peptide immunogen constructs of this instant invention.

(a) Amyloid Beta (Aβ) Peptide

The article in Wikipedia entitled “Beta amyloid” provides an updated review of the subject (http://en.wikipedia.org/wiki/Beta_amyloid). The internet link to this article is provided here as a reference.

Amyloid beta (Aβ or Abeta) is a peptide of 36-43 amino acids that is processed from the Amyloid precursor protein. Aβ is the main component of deposits found in the brains of patients with Alzheimer's disease. Evidence has also been found that Aβ is a highly multifunctional peptide with significant non-pathological activity.

Aβ is formed after sequential cleavage of the amyloid precursor protein (APP), a transmembrane glycoprotein of undetermined function. APP can be processed by α-, β- and γ-secretases; Aβ protein is generated by successive action of the β and γ secretases. The γsecretase, which produces the C-terminal end of the Aβ peptide, cleaves within the transmembrane region of APP and can generate a number of isoforms of 36-43 amino acid residues in length. The most common isoforms are Aβ₁₋₄₀ (SEQ ID NO: 2) and Aβ₁₋₄₂ (SEQ ID NO: 1); the longer form is typically produced by cleavage that occurs in the endoplasmic reticulum, while the shorter form is produced by cleavage in the trans-Golgi network (Hartmann T, et al., 1997; Nature Medicine 3:1016-1020). The Aβ₁₋₄₀ form is the more common of the two, but Aβ₁₋₄₂ (SEQ ID NO: 1) is the more fibrillogenic and is thus associated with disease states.

Autosomal-dominant mutations in APP cause hereditary early-onset Alzheimer's disease (familial AD or FAD). This form of AD only accounts for no more than 10% of all cases, and the vast majority of AD is not accompanied by such mutations. However, familial Alzheimer disease is likely to result from altered proteolytic processing. Increases in either total Aβ levels or the relative concentration of both Aβ₁₋₄₀ and Aβ₁₋₄₂ (where the former is more concentrated in cerebrovascular plaques and the latter in neuritic plaques) have been implicated in the pathogenesis of both familial and sporadic Alzheimer's disease.

Due to its more hydrophobic nature, the Aβ₁₋₄₂ is the most amyloidogenic form of the peptide. However the central sequence KLVFFAE (Aβ₁₆₋₂₂) (SEQ ID NOs: 31) is known to form amyloid on its own, and probably forms the core of the fibril.

The “amyloid hypothesis” that the plaques are responsible for the pathology of Alzheimer's disease is accepted by the majority of researchers. An alternative hypothesis is that amyloid oligomers rather than plaques are responsible for the disease. Mice that are genetically engineered to express oligomers but not plaques (APP^(E693Q)) develop the disease. Furthermore mice that are, in addition, engineered to convert oligomers into plaques (APP^(E693)Q X PS1ΔE9), are no more impaired than the oligomer only mice. Atomic force microscopy, which can visualize nanoscale molecular surfaces, can be used to determine the aggregation state (oligomers) of Aβ peptide in vitro.

There are many different ways to measure Amyloid beta. It can be measured semi-quantitatively with immunohistochemical staining, which also allows for location determination. Aβ may be primarily vascular, as in cerebral amyloid angiopathy, or in senile plaques and vascular areas.

One highly sensitive method to measure Aβ is through a quantitative enzyme immunosorbent assay (qELISA), which utilizes a pair of antibodies that recognize Aβ.

Imaging compounds, notably Pittsburgh compound B, (6-OH-BTA-1, a thioflavin) and florbetapir F18 (18F-AV-45), can selectively bind to amyloid beta in vitro and in vivo. This technique, combined with Positron emission tomography (PET) imaging, has been used to image areas of plaque deposits in patients with Alzheimer's disease.

(b) B Cell Epitopes: N-Terminus of the Aβ Peptide

This invention is directed to a novel peptide composition for the generation of high titer oligoclonal antibodies with specificity for the N-terminus of the Aβ peptide, with cross-reactivities to the soluble Aβ₁₋₄₂ and the plaques in the brain of AD patients. The site-specificity of the peptide composition through efforts of rational designs minimizes the generation of antibodies that are directed to irrelevant sites on carrier proteins.

Table 1 provides a number of short linear peptides including peptide fragment(s) from the N-terminus of Aβ₁₋₄₂. The Aβ₁₋₄₂ (SEQ ID NO: 1) and Aβ₁₋₂₈ (SEQ ID NO: 3) peptides are sufficiently long enough to elicit an immune response without the need of a carrier protein. However, the shorter N-terminal Aβ peptides, such as Aβ₁₋₁₄, Aβ₁₋₁₂, Aβ₁₋₁₀ (SEQ ID NOs: 4 to 6), are non-immunogenic on their own, as shown in Table 4 of Example 7 (compare group 3 with groups 1 and 2 in the immunogenicity study). This result confirms the presence of an autologous T helper cell epitope (Th) between amino acids 15 to 28 that renders the Aβ₁₋₂₈ peptide immunogenic. The short Aβ fragments can be immunopotentiated by chemical coupling to a carrier protein, for example, Keyhole Limpet Hemocyanin (KLH) as shown in Group 4 of Table 6 in Example 7. Major deficiencies of such “Aβ peptide(s)-carrier” vaccines is that most (>90%) of antibodies generated by the combinations are the non-functional antibodies directed against the carrier protein KLH, as shown in Table 6, Group 4 of Example 7 and the potential for epitopic suppression.

The peptide immunogens of the present invention include 10 to 14 amino acids (10-to 14-mer) of the N-terminal fragment of the Aβ peptide, beginning with the amino acid Asp (D) at position 1. The wholly synthetic peptide immunogens comprising these Aβ peptide fragments also contain selected T helper cell epitopes (Th) (e.g. SEQ ID NOs: 33-47) having multiple MHC Class II binding motifs, which elicit an immune response that is exclusively focused at the N-terminus target sites on the Aβ₁₋₄₂ peptide with high cross-reactivities to the Aβ₁₋₄₂ peptide and the senile plaques in the brain of AD patients.

(c) Heterologous T Helper Cell Epitopes (Th Epitopes)

T cell epitopes are presented on the surface of an antigen-presenting cell, where they are bound to MHC molecules. T cell epitopes presented by MHC class I molecules are typically peptides between 8 and 11 amino acids in length, whereas MHC class II molecules present longer peptides, 13-17 amino acids in length, and non-classical MHC molecules also present non-peptidic epitopes such as glycolipids.

T helper cells (Th cells) are a subgroup of lymphocytes, a type of white blood cell, that play an important role in the immune system, particularly in the adaptive immune system. They help the activity of other immune cells by releasing T cell cytokines. They are essential in B cell antibody class switching, in the activation and growth of cytotoxic T cells, and in maximizing bactericidal activity of phagocytes such as macrophages.

T helper cell epitopes (Th epitopes) are the T cell epitopes that are presented on the surface of an antigen-presenting cell, where they are bound to MHC class II molecules and are 13 to 17 amino acids in length, which are specifically recognized by T helper cells, as described above.

Peptides binding to Major Histocompatibility Complex (MHC) class II molecules are crucial for initiation and regulation of immune responses. Predicting peptides that bind to a specific MHC molecule plays an important role in determining potential candidates for vaccines. The binding groove in class II MHC is open at both ends, allowing peptides longer than 9-mer to bind. Finding the consensus motif facilitating the binding of peptides to a MHC class II molecule is difficult because of different lengths of binding peptides and varying location of 9-mer binding core. The level of difficulty increases when the molecule is promiscuous and binds to a large number of low affinity peptides.

Over the past two decades, this inventor and her team have identified many potential Th epitopes with promiscuous binding motifs to MHC class II molecules of different species (e.g., human, pig, cattle, etc.) from proteins of many pathogens for use as heterogeneous Th epitopes for the design of peptide immunogen constructs (Wang C Y, 2004; U.S. Pat. No. 6,713,301 B1 and Wang C Y, 2005; U.S. Pat. No. 6,906,169) where specific target B cell epitopes (e.g., Aβ peptide fragments) are linked at either N or C-terminus to such Th epitopes for enhanced immunogenicity generating specific high titer antibodies directed against the B cell epitopes through rational design (5, 6). It is to be emphasized that all rationally designed immunogens employed in a vaccine are to be validated for the effectiveness of such Th epitopes through experimental immunization as part of a screening process (e.g. Example 7, Tables 4, 5, 6 and 7) to select the optimal Th epitopes for use in vaccine formulations. An ideal Th epitope will comprise multiple promiscuous MHC class II binding motifs to allow maximal activation of T helper cells leading to initiation and regulation of immune responses, and are usually immunosilent on their own, i.e. none of the antibodies generated by the immunogen constructs will be directed towards the Th epitopes (e.g., Groups 1, 2 and 3 of Table 6 of Example 7; and Group 1 of Table 7 in Examples 8 and 9), thus allowing very focused immune responses to be directed mostly towards the targeted B cell epitopes.

Th refers to a sequence of amino acids (natural or non-natural amino acids) that comprises a Th epitope. The Th domain of the subject peptides is about 9 to about 25 amino acids, preferably from about 13 to about 17 amino acids. A Th segment and functional immunological analogues thereof comprises a contiguous portion of a Th epitope that is sufficient to enhance or stimulate an immune response to the N-terminal fragment of Aβ₁₋₄₂ peptide from about 10 to about 14 amino acid residues (SEQ ID NOs: 4 to 6).

Th epitopes of the present invention include but are not limited to those derived from foreign pathogens as exemplified in Table 2 (SEQ ID NOs: 33-41). Further, Th epitopes include idealized artificial Th and idealized artificial combinatorial Th (SEQ ID NOs: 42-47). Peptides comprising combinatorial Th are produced simultaneously in a single solid-phase peptide synthesis in tandem with N-terminus Aβ peptide(s) sequences. Th sites also include immunological analogs Immunological Th analogues include immune-enhancing analogs, cross-reactive analogs and segments of any of these Th epitopes. Functional immunological Th analogues further include conservative substitutions, additions, deletions and insertions of from one to about five amino acid residues in the Th epitope which do not essentially modify the Th-stimulating function of the Th epitope as best illustrated in the several versions of the Th epitope derived from Measles Virus Fusion protein MVF1-5 Ths (SEQ ID NOs: 34, 41, 42, 44 and 46) and from Hepatitis B Surface Antigen HBsAg 1-3 Ths (SEQ ID NOs: 43, 45, 47).

The Aβ peptide immunogen constructs of this invention have the Th epitope from about 13 to about 20 amino acid residues covalently attached through “spacer A” to the C terminus of the N-terminal fragment of Aβ₁₋₄₂ peptide, as well as cross-reactive or functional analogues thereof. Cross-reactive and functional analogues of the Aβ peptide immunogen constructs (e.g., SEQ ID NOs: 48 to 65) according to the invention, may further comprise conservative substitutions, additions, deletions, or insertions of from one to about five amino acid residues provided that the peptide analogues are capable of eliciting immune responses cross-reactive with the Aβ₁₋₄₂ peptides. The conservative substitutions, additions, and insertions can be accomplished with natural or non-natural amino acids as defined herein.

Preferred peptide immunogens of this invention are the peptides containing the N-terminal fragment of the Aβ₁₋₄₂ peptide (SEQ ID NOs: 4 to 6) or cross-reactive immunological analogues thereof; a spacer (e.g. ε-Lys, Gly, or ε-Lys-Lys-Lys-Lys); and a Th epitope that is selected from those in Table 2 (SEQ ID NOs: 34, 37, 38, 40-47) (see immunogenicity testing results in Table 4 of Example 7).

Functional immunologically analogues (e.g. various sequences of MvF Ths, SEQ ID NOs: 34, 41, 42, 44, and 46; and HBsAg Ths, SEQ ID NOs: 43, 45, 47) of the Th epitope peptides are also effective and included as part of the present invention. Functional immunological analogs of Aβ peptide immunogen constructs include variants of SEQ ID NOs: 49-51, 54-55, 57-65 and/or homologues of SEQ ID NOs: 49-51, 54-55, 57-65 that retain substantially the same immunogenicity as the original peptide SEQ ID NOs: 51 and 60. For example, variants that are functional analogues can have a conservative substitution in an amino acid position; a change in overall charge; a covalent attachment to another moiety; or amino acid additions, insertions, or deletions; and/or any combination thereof.

Conservative substitutions are when one amino acid residue is substituted for another amino acid residue with similar chemical properties. For example, the nonpolar (hydrophobic) amino acids include alanine, leucine, isoleucine, valine, proline, phenylalanine, tryptophan and methionine; the polar neutral amino acids include glycine, serine, threonine, cysteine, tyrosine, asparagine, and glutamine; the positively charged (basic) amino acids include arginine, lysine and histidine; and the negatively charged (acidic) amino acids include aspartic acid and glutamic acid.

In a particular embodiment, the functional analogue has at least 50% identity to the original amino acid sequence. In another embodiment, the functional analogue has at least 80% identity to the original amino acid sequence. In yet another embodiment, the functional analogue has at least 85% identity to the original amino acid sequence. In still another embodiment, the functional analogue has at least 90% identity to the original amino acid sequence.

In one embodiment, the functional immunological analogue of a particular peptide contains the same amino acid sequence as the original peptide and further includes three lysines (Lys-Lys-Lys) added to the amino terminus of the peptide. In this embodiment, the inclusion of three lysines to the original peptide sequence changes the overall charge of the original peptide, but does not alter the function of the original peptide as illustrated in the MVF Th peptide series (Tables 2 to 7).

Table 2 identifies another variation of a functional analogue for Th epitope peptide. In particular, SEQ ID NOs: 34 and 41 of MVF1 Th and MVF2 Th are functional analogues of SEQ ID NOs: 44 and 46 of MVF4 Th and MVF5 Th in that they differ in the amino acid frame by the deletion (SEQ ID NOs: 34 and 41) or the inclusion (SEQ ID NOs: 44 and 46) of two amino acids each at the N- and C-termini. The differences between these two series of analogous sequences would not affect the function of the Th epitopes contained within these sequences (e.g. Groups 7, 8, 14 of Table 4 in Example 7 vs. Group 1 of Table 5 in Example 7 and Group 1 of Table 7 in Example 8).

In other variations, the heterologous Th epitope peptides can be presented as a combinatorial sequence, which contains a mixture of amino acid residues represented at specific positions within the peptide framework based on the variable residues of homologues for that particular peptide. An assembly of combinatorial peptides can be synthesized in one process by adding a mixture of the designated protected amino acids, instead of one particular amino acid, at a specified position during the synthesis process. Such combinatorial heterologous Th epitope peptides assemblies can allow broad Th epitope coverage for animals having a diverse genetic background. Representative combinatorial sequences of heterologous Th epitope peptides include SEQ ID NOs: 42 to 45, which are shown in Table 2. Th epitope peptides of the present invention provide broad reactivity and immunogenicity to animals and patients from genetically diverse populations.

Generally, the Aβ peptide immunogen construct of this invention is represented by the following formula:

(N-terminal fragment of Aβ₁₋₄₂ peptide)-(A)_(o)-(Th)-X

wherein (N-terminal fragment of Aβ₁₋₄₂ peptide) is a B cell epitope selected from the group consisting of SEQ ID NOs: 4 to 6 from about 10 to about 14 amino acid residues;

each A is independently an amino acid or a linking group chosen from the group consisting of an amino acid, Lys-, Gly-, Lys-Lys-Lys-, (α, ε-N)Lys, or ε-N-Lys-Lys-Lys-Lys (SEQ ID NOs: 32);

each Th comprises an amino acid sequence that constitutes a helper T cell epitope selected from the group consisting of SEQ ID NOs: 34, 37, 38, 40 to 47 and functional immunological analogues thereof;

X is an α-COOH or α-CONH₂ of an amino acid; and

-   -   o is from 0 to about 4.     -   The Aβ peptide immunogen construct of the present invention         comprises from about 20 to about 50 amino acid residues,         preferably from about 25 to about 40 amino acid residues.

The conformational separation provided by a spacer (A) permits more efficient interactions between the presented Aβ peptide immunogen construct and the appropriate Th cells and B cells and thus enhances the immunogenicity of the Aβ peptide immunogen constructs or cross-reactive functional immunological analogues thereof.

(d) Compositions

(i) Peptide Compositions:

Compositions of the present disclosure can contain one or more Aβ peptide immunogen constructs. Peptide compositions that comprise a mixture of the Aβ peptide immunogen constructs with two or more of the Th epitopes can be prepared in a pharmaceutical/vaccine formulation to allow for synergistic enhancement of the immunoefficacy in a broader genetic population due to a broader MHC class II coverage. Such compositions can provide an improved immune response to the Aβ₁₋₄₂ peptide fragments.

For example, the compositions can contain Aβ peptide immunogen constructs as shown in Table 3 (SEQ ID NOs: 48 to 65), homologues, analogues and/or combinations thereof. More specifically, peptide compositions can contain Aβ peptide immunogen constructs having the sequence selected from SEQ ID NOs: 62, 63, 64 and 65, homologues, analogues and/or combinations thereof (e.g. SEQ ID NOs: 62 and 63 as an equimolar mixture as shown in Example 7 or SEQ ID NOs: 64 and 65 as another equimolar mixture in Examples 8, 9, and 10).

(ii) Pharmaceutical Compositions:

The present disclosure is also directed to compositions containing a mixture of Aβ peptide immunogen constructs that are pharmaceutical compositions for treating and/or preventing dementia of the Alzheimer's type in patients at risk for, or with, AD.

Compositions can be prepared in liquid form (e.g., solutions or suspensions). Typically, compositions are prepared as injectables, either as liquid solutions or suspensions. Liquid vehicles prior to injection can also be prepared. Additional formulations suitable for other modes of administration include oral and intranasal applications. Effective doses of the compositions of the present invention, for the treatment of the above described conditions vary depending upon many different factors, including means of administration, target site, physiological state of the patient, whether the patient is human or an animal, other medications administered, and whether treatment is prophylactic or therapeutic. Usually, the patient is a human but nonhuman mammals including transgenic mammals can also be treated.

The pharmaceutical compositions are formulated to contain an effective amount of Aβ peptide immunogen construct and a pharmaceutically acceptable carrier. The pharmaceutical compositions are also formulated in a suitable dosage unit form generally containing from about 0.5 μg to about 1 mg of the immunogen per kg body weight. When delivered in multiple doses, the pharmaceutical compositions may be conveniently divided into an appropriate amount per dosage unit form. The administered dosage will depend on the age, weight and general health of the subject as is well known in the vaccine and therapeutic arts.

(iii) Pharmaceutical Vaccine Formulations:

In certain embodiments, a pharmaceutical composition comprising Aβ peptide immunogen constructs is used to elicit an immune response to the N-terminus of the Aβ peptide in a vaccine host. Pharmaceutical compositions containing Aβ peptide immunogen constructs of the present invention can be used as a vaccine for prevention and treatment of dementia of Alzheimer's type for vaccine hosts or patients at risk for, or with, AD.

Additionally, compositions can contain carriers and/or other additives in a pharmaceutically acceptable delivery system. Accordingly, a composition containing the Aβ peptide immunogen constructs can be formulated as a pharmaceutical vaccine formulation using adjuvants, pharmaceutically-acceptable carriers or other ingredients including immunological adjuvants routinely provided in vaccine formulations. An immunologic adjuvant is defined as “any substance that acts to accelerate, prolong, or enhance antigen-specific immune responses without having any specific antigenic effect in itself when used in combination with specific vaccine antigens.” There are many known adjuvants in widespread use, including oils, aluminum salts, and virosomes. Two common salts including aluminum phosphate (e.g. Adjuphos) and aluminum hydroxide (e.g. Alhydrogel) are the most common adjuvants in human vaccines. Methods for selecting mineral salts and determining the preferred concentration of mineral salt to employ or combinations thereof are well known to those skilled in the art.

Among other ingredients that can also be used as adjuvants in this invention include liposyn, saponin, squalene, L121, Emulsigen, monophosphoryl lipid A (MPL), QS21, ISA 35, ISA 206, ISA50V, ISA51, and ISA 720 as well as the other efficacious adjuvants and emulsifiers. In a particular embodiment, the delivery vehicle and adjuvant is Montanide™ ISA 51 (an oil vaccine adjuvant composition comprised of vegetable oil and mannide oleate for production of water-in-oil emulsions), Tween® 80 (also known as: Polysorbate 80 or Polyoxyethylene (20) sorbitan monooleate), a CpG oligonucleotide, and/or any combination thereof. In another embodiment, the pharmaceutical composition is a water-in-oil-in-water (i.e. w/o/w) emulsion with Emulsigen or Emulsigen D as the adjuvant.

Pharmaceutical compositions as vaccines can be formulated as immediate-release or sustained-release formulations. Additionally the pharmaceutical compositions can be formulated for induction of systemic or localized mucosal, immunity through immunogen entrapment and co-administration with microparticles. Such delivery systems are readily determined by one of ordinary skill in the art.

Various vaccine formulations containing Aβ peptide immunogen constructs of the present disclosure are effective for protecting and treatment of dementia of Alzheimer's type in vaccine hosts or patients at risk for, or with, AD.

(iv) Aβ Peptide Immunostimulatory Complexes:

In certain embodiments, the pharmaceutical composition can contain immunostimulatory complexes comprising (a) CpG oligonucleotide and (b) Aβ peptide immunogen constructs. Such immunostimulatory complexes are specifically adapted to act as an adjuvant and as a peptide immunogen stabilizer. The immunostimulatory complexes are in the form of a particulate, which can efficiently present Aβ peptide immunogen constructs to the cells of the immune system to produce an immune response. The immunostimulatory complexes may be formulated as a suspension for parenteral administration. The immunostimulatory complexes may also be formulated in the form of w/o emulsions, as a suspension in combination with a mineral salt or with an in-situ gelling polymer for the efficient delivery of the Aβ peptide immunogen constructs to the cells of the immune system of a vaccine host following parenteral administration, to produce an anti-Aβ immune response with protective benefit. The present invention is directed to a stabilized immunostimulatory complex comprising a cationic Aβ peptide immunogen construct and an anionic molecule or oligonucleotide or polynucleotide and combinations thereof and a method for stabilizing a cationic Aβ peptide immunogen construct by complexation with an anionic molecule or oligonucleotide or polynucleotide via electrostatic association. The stabilized immunostimulatory complex may be incorporated into a pharmaceutical composition as an immunogen delivery system.

An Aβ peptide immunogen construct being a “cationic peptide” as described herein refers to a peptide that is positively charged at a pH in the range of 5.0 to 8.0. The net charge on the peptide or peptide cocktails is calculated by assigning a +1 charge for each lysine (K), arginine (R) or histidine (H), a −1 charge for each aspartic acid (D) or glutamic acid (E) and a charge of 0 for the other amino acid within the sequence. The charge contributions from the N-terminal amine (+1) and C-terminal carboxylate (−1) end groups of each peptide effectively cancel each other when unsubstituted. The charges are summed for each peptide and expressed as the net average charge. A suitable peptide immunogen has a net average positive charge of +1. Preferably, the peptide immunogen has a net positive charge in the range that is larger than +2.

An “anionic molecule” as described herein refers to a molecule that is negatively charged at a pH in the range of 5.0-8.0. The net negative charge on the oligomer or polymer is calculated by assigning a −1 charge for each phosphodiester or phosphorothioate group in the oligomer. A suitable anionic oligonucleotide is a single-stranded DNA molecule with 8 to 64 nucleotide bases, with the number of repeats of the CpG motif in the range of 1 to 10. Preferably, the CpG immunostimulatory single-stranded DNA molecules contain 18-48 nucleotide bases, with the number of repeats of CpG motif in the range of 3 to 8.

More preferably the anionic oligonucleotide is represented by the formula: 5′ X¹CGX² 3′ wherein C and G are unmethylated; and X¹ is selected from the group consisting of A (adenine), G (guanine) and T (thymine); and X² is C (cytosine) or T (thymine). Or, the anionic oligonucleotide is represented by the formula: 5′ (X³)₂CG(X⁴)₂ 3′ wherein C and G are unmethylated; and X³ is selected from the group consisting of A, T or G; and X⁴ is C or T.

The resulting immunostimulatory complex is in the form of particles with a size typically in the range from 1-50 microns and is a function of many factors including the relative charge stoichiometry and molecular weight of the interacting species. The particulated immunostimulatory complex has the added advantage of providing adjuvantation and upregulation of specific immune responses in vivo. Additionally, the stabilized immunostimulatory complex is suitable for preparing vaccine formulations by various processes including water-in-oil emulsions, mineral salt suspensions and polymeric gels.

(e) Methods for Manufacturing

The present disclosure is also directed to methods for the manufacturing of the Aβ peptide immunogen constructs, compositions and pharmaceutical compositions, vaccine formulations for eliciting immune responses and protecting patients at risk for, or with, AD.

(i) Methods for the Manufacturing of the Aβ Peptide Immunogen Constructs.

The peptide immunogens of this invention can be made by chemical synthesis methods well known to the ordinarily skilled artisan. See, for example, Moore V. Chapter 2 in Synthetic Peptides: A User's Guide, ed. GA Grant, W. H. Freeman & Co., New York, N.Y., 1992, p. 63-67. Hence, peptides can be synthesized using the automated Merrifield techniques of solid phase synthesis with the α-NH₂ protected by either t-Boc or F-moc chemistry using side chain protected amino acids on, for example, an Applied Biosystems Peptide Synthesizer Model 430A or 431. Preparation of peptide constructs comprising combinatorial library peptides for Th epitopes can be accomplished by providing a mixture of alternative amino acids for coupling at a given variable position.

After complete assembly of the desired peptide immunogen, the resin is treated according to standard procedures to cleave the peptide from the resin and deblock the functional groups on the amino acid side chains. The free peptide is purified by HPLC and characterized biochemically, for example, by amino acid analysis or by sequencing. Purification and characterization methods for peptides are well known to one of ordinary skill in the art.

The immunogen of the present invention may also be prepared as a branched polymer by synthesis of the desired peptide construct directly onto a branched poly-lysyl core resin (Wang, et al., Science, 1991; 254:285-288).

The quality of peptides produced by this chemical process can be controlled and defined and, as a result, reproducibility of antigenicity, immunogenicity and yield can be assured. Detailed description of the manufacturing of the Aβ related peptide or peptide immunogen constructs through solid phase peptide synthesis is shown in Example 1.

During 25 years of experience in immunological applications of synthetic peptides, the applicant has found that the range in structural variability that allows for retention of an intended immunological activity is far more accommodating than the range in structural variability allowed for retention of a specific drug activity by a small molecule drug or the desired activities and undesired toxicities found in large molecules that are co-produced with biologically-derived drugs. Thus, peptide analogues, either intentionally designed or inevitably produced by errors of the synthetic process as a mixture of deletion sequence byproducts that have chromatographic and immunologic properties similar to the intended peptide, are frequently as effective as a purified preparation of the desired peptide. Designed analogues and unintended analogue mixtures are effective as long as a discerning QC procedure is developed to monitor both the manufacturing process and the product evaluation process so as to guarantee the reproducibility and efficacy of the final products employing these peptides.

The peptides can also be made using recombinant DNA technology including nucleic acid molecules, vectors, and/or host cells. As such, nucleic acid molecules encoding the Aβ peptide immunogen constructs and immunologically functional analogues of the Aβ peptide immunogen constructs and analogues/homologues thereof are also encompassed by the present disclosure as part of the present invention. Similarly, vectors, including expression vectors, comprising nucleic acid molecules as well as host cells containing the vectors are also encompassed by the present disclosure as part of the present invention.

Various exemplary embodiments also encompass methods of producing the Aβ peptide immunogen constructs and immunologically functional analogues of the Aβ peptide immunogen constructs. For example, methods can include a step of incubating a host cell containing an expression vector containing a nucleic acid molecule encoding an Aβ peptide immunogen constructs and/or immunologically functional analogue thereof under such conditions where the peptide and/or analogue is expressed. The longer synthetic peptide immunogens can be synthesized by well-known recombinant DNA techniques. Such techniques are provided in well-known standard manuals with detailed protocols. To construct a gene encoding a peptide of this invention, the amino acid sequence is reverse translated to obtain a nucleic acid sequence encoding the amino acid sequence, preferably with codons that are optimum for the organism in which the gene is to be expressed. Next, a synthetic gene is made, typically by synthesizing oligonucleotides which encode the peptide and any regulatory elements, if necessary. The synthetic gene is inserted in a suitable cloning vector and transfected into a host cell. The peptide is then expressed under suitable conditions appropriate for the selected expression system and host. The peptide is purified and characterized by standard methods.

(ii) Methods for the Manufacturing of Immunostimulatory Complexes

Various exemplary embodiments also encompass methods of producing the Immuno-Stimulatory Complexes (ISC) comprising Aβ peptide immunogen constructs and CpG oligodeoxynucleotide (ODN) molecule. In one embodiment, as illustrated in FIG. 5A, stabilized immunostimulatory complexes are derived from cationic peptides and a polyanionic CpG ODN molecule. FIG. 5A illustrates a self-assembling system driven by electrostatic neutralization of charge. Stoichiometry of the molar charge ratio of cationic peptide to anionic oligomer determines extent of association. The non-covalent electrostatic association of peptide immunogens and CpG ODN is a completely reproducible process. The peptide/CpG ODN immunostimulatory complex self-aggregates and facilitates presentation to the “professional” antigen processing cells (APC) of the immune system thus further enhancing of the immunogenicity of the complexes. These complexes are easily characterized for quality control during manufacturing. The peptide/CpG ISC are well tolerated in vivo.

In one embodiment, the vaccine formulation (UBI AD vaccine) employs two Aβ peptide immunogen constructs (SEQ ID NOs: 64 and 65), prepared in an equimolar ratio, mixed with a proprietary CpG ODN which results in the spontaneous formation of immunostimulatory complexes in solution, as described in Examples 8 and 9. This novel particulate system comprising CpG ODN and Aβ peptide immunogen constructs, was designed to take advantage of the generalized B cell mitogenicity associated with CpG ODN use, yet promote balanced Th-1/Th-2 type responses.

The CpG ODN in the disclosed vaccine formulation is 100% bound to immunogen in a process mediated by electrostatic neutralization of opposing charge, resulting in the formation of micron-sized particulates. The particulate form allows for a significantly reduced dosage of CpG from the conventional use of CpG adjuvants, has less of a potential for adverse innate immune responses, and facilitates alternative immunogen processing pathways including antigen-presenting cells (APC). Consequently, the disclosed formulations (UBI AD vaccines) are novel conceptually and offer advantages by promoting the stimulation of immune responses by alternative mechanisms.

(iii) Methods for the Manufacturing of Vaccine Formulations.

Various exemplary embodiments also encompass vaccine formulations employing water in oil emulsions and in suspension with mineral salts, as shown in FIG. 5B. In order for a vaccine designed to be used by a large population and with prevention also being part of the goal for administration, safety becomes another important factor for consideration. Despite the use of water-in-oil emulsions in humans for many vaccine formulations in clinical trials, Alum remains the major adjuvant for use in vaccine formulations due to its decades of safety testing. Alum or its mineral salts Adjuphos (Aluminum phosphate) were used as adjuvants in preparation for clinical applications, as illustrated in Examples 8 and 9.

(f) Methods for Treatment and Prevention of Alzheimer's Disease

(i) Treatment Regimes

In prophylactic applications, pharmaceutical compositions are administered to a patient susceptible to, or at risk of, Alzheimer's disease in an amount sufficient to eliminate or reduce the risk, lessen the severity, or delay the onset of the disease, (biochemical, histologic and/or behavioral), including its complications and intermediate pathological phenotypes in development of the disease.

In therapeutic applications, compositions are administered to a patient suspected of, or already suffering from, such a disease in an amount sufficient to cure, or at least partially arrest the symptoms of the disease (biochemical, histologic and/or behavioral), including its complications and intermediate pathological phenotypes in development of the disease.

In some methods, administration of agent reduces or eliminates mild cognitive impairment in patients that have not yet developed characteristic Alzheimer's pathology. An amount adequate to accomplish therapeutic or prophylactic treatment is defined as a therapeutically- or prophylactically-effective dose. In both prophylactic and therapeutic regimes, agents are usually administered in several dosages until a sufficient immune response has been achieved. Typically, the immune response is monitored and repeated dosages are given if the immune response starts to wane.

(ii) Patients Amenable to Treatment

Patients amenable to treatment include individuals who are at risk of developing Alzheimer's disease but not showing symptoms, as well as patients that are presently showing symptoms.

The term “prophylactic treatment” as used herein relates to a treatment aiming to halt pathogenic processes leading to disease.

The term “treatment” as used herein relates to a treatment aiming to halt pathogenic processes that lead to disease progression and/or has symptomatic effects.

Virtually every person is at risk of suffering from Alzheimer's disease if he or she lives long enough. Therefore, the present methods can be administered prophylactically to the general population without the need for any assessment of the risk of the subject patient (i.e., any living person can qualify as a patient). The present methods are especially useful for individuals who do have a known genetic risk of Alzheimer's disease. Such individuals include those having relatives who have experienced this disease, and those whose risk is determined by analysis of genetic or biochemical markers. Genetic markers of risk toward Alzheimer's disease include mutations in the APP gene, particularly mutations at position 717 and positions 670 and 671 referred to as the Hardy and Swedish mutations respectively (see Hardy J. Trends in Neurosciences 1997; 20:154-159). Other markers of risk are mutations in the presenilin genes, PS1 and PS2, and ApoE4, family history of AD, hypercholesterolemia or atherosclerosis.

In general, patients are selected from an at risk group of subjects consisting of patients with mild cognitive impairment, patients with genotypes known to be associated with Alzheimer's Disease, patients with Trisomy 21 (i.e. potential Down's syndrome patients), patients with surrogate markers indicating risk for Alzheimer's Disease.

In asymptomatic patients, treatment can begin at any age (e.g., 10, 20, 30 years). It is not necessary to begin treatment until a patient reaches 40, 50, 60 or 70 years. In the case of potential Down's syndrome patients, treatment can begin antenatally by administering therapeutic agent to the mother or shortly after birth.

Individuals presently suffering from Alzheimer's disease can be recognized from characteristic dementia, which, as used herein, relates in particular to a disease as defined according to the Diagnostic and Statistical Manual of Mental Disorders, 4th edition (DSM-IV) criteria, as well as the presence of risk factors described above. In addition, a number of diagnostic tests are available for identifying individuals who have AD. These include measurement of CSF tau and Aβ₁₋₄₂ levels. Elevated tau and decreased Aβ₁₋₄₂ levels signify the presence of AD. Individuals suffering from Alzheimer's disease can also be diagnosed by NINCDS-ADRDA Alzheimer's Criteria.

Treatment typically entails multiple dosages over a period of time. Treatment can be monitored by assaying antibody, or activated T-cell or B-cell responses to the therapeutic agent (e.g., Aβ₁₋₄₂ ELISA) over time. If the response falls, a booster dosage is indicated.

Considerable evidence has been accumulated suggesting that the Aβ-amyloid peptide, the major component of senile amyloid plaques, plays a causal role in AD. Successful disease-modifying therapy for AD is likely to include products that affect the deposition of β-amyloid in the brain. Aβ-specific antibodies, actively generated by the immune system or passively administered, consistently reduce plaque burden in different transgenic mouse models. A first clinical attempt to stimulate the immune system of AD patients to generate anti-Aβ antibodies, however, had to be suspended due to unacceptable side effects (meningoencephalitis in 6% of treated patients, Orgogozo J M, et al. Neurology 2003; 61: 46-54.).

Surprisingly, no adverse immune reactions or incidence of microhemorrhages are observed with the presently disclosed formulation (UBI AD vaccine) employing two Aβ₁₋₁₄ peptide immunogen constructs (SEQ ID NOs: 64 and 65), at an equimolar ratio, linked to two idealized artificial T helper epitopes derived from Measles Virus Fusion (MVF) protein and Hepatitis B Surface Antigen (HBsAg), respectively.

In one aspect of the disclosed method, it was surprisingly found that the Aβ peptide immunogen constructs advantageously can be applied intramuscularly to warm-blooded animals, especially humans, suffering from dementia.

In a second aspect, the present invention provides a dosage form for intramuscularly administration of the Aβ peptide immunogen constructs. The preferred dosage form for intramuscular of the Aβ peptide immunogen constructs is a vaccine formulation containing between 30 μg to 1000 μg/0.5 mL/dose peptide immunogen constructs in complexed with CpG ODN in the presence of mineral salts as the adjuvant, preferably between 100 μg to 400 μg/0.5 mL/dose, and more preferably 300 μg/0.5 mL/dose. The dosage form can be kept at 2 to 8° C. until shortly before usage. The dosage form is administered preferably by intramuscular injection with a syringe to the warm-blooded animal, especially into the arm. For warming up of the dosage form, the dosage form can be kept at ambient temperature for about between 15 minutes and 45 minutes, e.g. 30 minutes. Preferably, before withdrawing drug substance, the vials are gently inverted several times for dispersion of potential subvisual particles.

In a third aspect, the present invention relates to a method of prevention and treatment of dementia in human patients comprising administering 30 μg to 1000 μg/0.5 mL per dose, preferably 100 μg to 400 μg/0.5 mL per dose, more preferably about 300 μg/0.5 mL per dose, to human patients in need thereof about once every 12 weeks, preferably about once every 26 weeks, in particular about once 52 weeks, after the initial priming at 0, 4, and 8 weeks after initial immunization. Frequency of injection can vary depending on the patient response. For example, the frequency of administration can vary if the injection has to be administered according to antibody titers.

The usefulness of the Aβ peptide immunogen constructs in the treatment of the above-mentioned disorders can be confirmed in suitable clinical studies, e.g., applying a total of three dosages at 0, 4, and 12 weeks with each time applying 300 μg/0.5 mL per dose of vaccine formulation and then followed for over 9 months period, such as those described in the Examples. There can be a follow up immunizations of once every three, six or 12 months according to antibody titers.

Suitable clinical studies are open label studies or in particular randomized, double-blind, placebo-controlled, parallel studies in patients at risk of Alzheimer's Disease or with symptoms of Alzheimer's Disease.

A specific embodiment encompasses vaccine formulation (UBI AD vaccine) which contains a mixture of two Aβ peptide immunogen constructs (SEQ ID NOs: 64 and 65) each with the N-terminus (Aβ₁₋₁₄, SEQ ID NO: 4) of Aβ₁₋₄₂ peptide synthetically linked to T helper (Th) epitopes (SEQ ID NOs: 46 and 47), devoid of the toxic effects observed with autologous Th epitopes in patients receiving the AN-1792 vaccine (aggregated Aβ₁₋₄₂/Elan/Wyeth). In vitro studies and in vivo studies in small animals, baboons and macaques show that antibodies are generated with the expected N-terminus site-specificity, and that these antibodies have functional immunogenicities to neutralize the toxic activity of Aβ and promote plaque clearance. The antibodies appear to draw Aβ₁₋₄₀ from the CNS into peripheral circulation. Results indicate that the vaccine did not evoke anti-Aβ₁₋₄₂ cellular responses. The UBI AD vaccine was well tolerated in cynomolgus macaques during a repeat dose acute and chronic toxicity study. The safety and immunogenicity of UBI AD vaccine formulation embodied in Examples 8 and 9 were further tested in a phase I trial in patients with mild to moderate AD and found to elicit antibodies with specificity to the N-terminus of Aβ₁₋₁₄ peptide in all 19 patients, thus achieving an unprecedented 100% response rate, after intramuscular immunization at 0, 4 and 12 weeks, without causing any serious or intolerable adverse events. A subset of older subjects with mild AD (n=6; age ≧60 years with baseline MMSE ≧20) showed both high antibody responses to the UBI AD vaccine formulation and improved cognitive and functional outcomes as assessed by (i) ADAS-Cog (AD Assessment Scale—Cognitive); (ii) ADCS-CGIC (Alzheimer's Disease Cooperative Study—Clinical Global Impressions of Change); and (iii) MMSE (Mini-Mental State Exam) scores when compared to baseline scores, during the 6-month core study and after the 6-month observational follow-up period. ADAS-Cog is the most popular cognitive testing instrument used in clinical trials. ADAS-Cog consists of 11 tasks (70-points) that measures the disturbances of memory, language, praxis, attention and other cognitive abilities, which are often referred to as core symptoms of AD (increase in score indicates deterioration). ADCS-CGIC is a single global rating of change from baseline (decrease in score indicates deterioration). MMSE is the most commonly used instrument for screening cognitive function and provides a measure of orientation, registration, short-term memory, language functioning (decrease in score indicates deterioration). In phase IIa trial, biomarkers (molecular diagnostics, brain imaging, genetic typing) are used to evaluate efficacy of the vaccine formulation in patients with mild AD including assessment of decrease in progression of the disease by increasing, through active immunization, anti-Aβ₁₋₁₄ antibodies in circulation, presumably to reduce the concentration of toxic Aβ oligomers in brain.

(g) Specific Embodiments

Specific embodiments of the present invention include, but are not limited to, the following:

-   (1) An Aβ peptide immunogen construct comprising the following     formula:

(N-terminal fragment of Aβ₁₋₄₂peptide)-(A)o-(Th)-X

wherein (N-terminal fragment of Aβ₁₋₄₂ peptide) is a B cell epitope from Aβ comprising about 10 to about 14 amino acid residues selected from the group consisting of SEQ ID NOs: 4, 5, and 6;

each A is independently an amino acid or a linking group selected from the group consisting of an amino acid, Lys-, Gly-, Lys-Lys-Lys-, (α, ε-N)Lys, and ε-N-Lys-Lys-Lys-Lys (SEQ ID NOs: 32);

each Th comprises an amino acid sequence that constitutes a helper T cell epitope selected from the group consisting of SEQ ID NOs: 34, 37, 38, 40 to 47 and functional immunological analogues thereof;

X is an α-COOH or α-CONH2 of an amino acid; and

o is from 0 to about 4.

-   (2) The Aβ peptide immunogen construct of (1), wherein the     (N-terminal fragment of Aβ₁₋₄₂ peptide) is Aβ₁₋₁₄ (SEQ ID NO: 4). -   (3) The Aβ peptide immunogen construct of (1), wherein A is     ε-N-Lys-Lys-Lys-Lys (SEQ ID NOs: 32). -   (4) The Aβ peptide immunogen construct of (1), wherein the Th     epitope is SEQ ID NOs: 45 or 46. -   (5) The Aβ peptide immunogen construct of (1), comprising the amino     acid sequence of SEQ ID NOs: 48-65. -   (6) The Aβ peptide immunogen construct of (1), consisting     essentially of the amino acid sequences of SEQ ID NOs: 62-65. -   (7) The Aβ peptide immunogen construct of (1) that is SEQ ID NOs:     62, 63, 64, and/or 65. -   (8) A composition comprising the Aβ peptide immunogen construct of     claim 1. -   (9) A pharmaceutical composition comprising     -   a. the Aβ peptide immunogen construct of (1); and     -   b. a pharmaceutically acceptable delivery vehicle and/or         adjuvant. -   (10) An Alzheimer's Disease vaccine composition comprising     -   a. the Aβ peptide immunogen construct of (1); and     -   b. a pharmaceutically acceptable delivery vehicle and/or         adjuvant. -   (11) An Alzheimer's Disease vaccine composition comprising     -   a. the Aβ peptide immunogen construct of (7); and     -   b. a pharmaceutically acceptable delivery vehicle and/or         adjuvant. -   (12) The Alzheimer's Disease vaccine composition of (10), wherein     the adjuvant in (b) is a mineral salt of Aluminum selected from the     group consisting of alhydrogel (Al(OH)₃) or adjuphos (AlPO₄). -   (13) The Alzheimer's Disease vaccine composition of (10), wherein     the peptide antigen in (a) is mixed with an CpG oligodeoxynucleotide     (ODN) to form a stabilized immunostimulatory complex. -   (14) An isolated antibody or epitope-binding fragment thereof which     binds to the (N-terminal fragment of Aβ₁₋₄₂ peptide) component of     the Aβ peptide immunogen construct of (1). -   (15) The isolated antibody or epitope-binding fragment thereof of     (14), which specifically binds to Aβ₁₋₁₀ (SEQ ID NO: 6). -   (16) The isolated antibody or epitope-binding fragment thereof of     (14), bound to the Aβ peptide immunogen construct of claim 1. -   (17) The isolated antibody or epitope-binding fragment thereof of     (15), bound SEQ ID NO: 6. -   (18) A composition comprising the isolated antibody or     epitope-binding fragment thereof of (14). -   (19) A method of reducing the severity or delaying onset of dementia     in human patients comprising administering a vaccine formulation     according to (10). -   (20) The method of (19), wherein said vaccine formulation is     administered in an aqueous solution comprising between 10 ug and     1000 ug per dose to patients at risk for, or with, AD.

(h) Additional Embodiments

-   (1) An Aβ peptide immunogen construct of this invention is     represented by the following formula:

(N-terminal fragment of Aβ₁₋₄₂ peptide)-(A)_(o)-(Th)-X

-   -   wherein (N-terminal fragment of Aβ₁₋₄₂ peptide) is a B cell         epitope selected from the group consisting of SEQ ID NOs: 4 to 6         from about 10 to about 14 amino acid residues;     -   each A is independently an amino acid or a linking group chosen         from the group consisting of an amino acid, Lys-, Gly-,         Lys-Lys-Lys-, (α, ε-N)Lys, or ε-N-Lys-Lys-Lys-Lys (SEQ ID NO:         32);     -   each Th comprises an amino acid sequence that constitutes a         helper T cell epitope selected from the group comprising SEQ ID         NOs: 34, 37, 38, 40 to 47 and functional immunological analogues         thereof;     -   X is an α-COOH or α-CONH₂ of an amino acid; and         -   o is from 0 to about 4.

-   (2) An Alzheimer's Disease (AD) vaccine composition, comprising     -   a. an Aβ peptide immunogen construct according to (1);     -   b. a functional immunological analogue of (a);     -   c. any combination of (a) or (b); and     -   d. an acceptable delivery vehicle or adjuvant.

-   (3) The AD vaccine according to (2), wherein the adjuvant in (d) is     a mineral salt of Aluminum being alhydrogel (Al(OH)₃) or adjuphos     (AlPO₄).

-   (4) The AD vaccine according to (2), wherein the peptide antigen     in (a) is mixed with an CpG oligodeoxynucleotide (ODN) to form a     stabilized immunostimulatory complex.

-   (5) An Alzheimer's Disease (AD) vaccine composition, comprising     -   a. an Aβ peptide immunogen construct selected from the group         comprising SEQ ID NOs: 49-51, 54, 55, and 57-65;     -   b. a functional immunological analogue of (a);     -   c. any combination of (a) or (b); and     -   d. an acceptable delivery vehicle or adjuvant.

-   (6) An Alzheimer's Disease (AD) vaccine composition, comprising     -   a. an Aβ peptide immunogen construct according to (5);     -   b. a functional immunological analogue of (a);     -   c. any combination of (a) or (b); and     -   d. an acceptable delivery vehicle or adjuvant.

-   (7) The AD vaccine according to (5), wherein the adjuvant in (d) is     a mineral salt of Aluminum being alhydrogel (Al(OH)₃) or adjuphos     (AlPO₄).

-   (8) The AD vaccine according to (5), wherein the peptide antigen in     (a), (b), or (c) is mixed with an CpG oligodeoxynucleotide (ODN) to     form a stabilized immunostimulatory complex.

-   (9) The AD vaccine according to (5), wherein the peptide antigen in     (a), (b), or (c) is mixed with an CpG oligodeoxynucleotide (ODN) to     form a stabilized immunostimulatory complex and, wherein the     adjuvant in (d) is a mineral salt of Aluminum that is alhydrogel     (Al(OH)₃) or adjuphos (AlPO₄).

-   (10) An Alzheimer's Disease (AD) vaccine composition, comprising     -   a. an Aβ peptide immunogen construct selected from the group         comprising SEQ ID NOs: 62+63, 64+65;     -   b. a functional immunological analogue of (a);     -   c. any combination of (a) or (b); and     -   d. an acceptable delivery vehicle or adjuvant.

-   (11) A composition comprising:     -   a. an Aβ peptide immunogen construct comprising a mixture of SEQ         ID NO: 64 and SEQ ID NO: 65; and     -   b. the mixture of (a) further mixed with CpG ODN.

-   (12) A pharmaceutical composition comprising:     -   a. an Aβ peptide immunogen construct comprising a mixture of SEQ         ID NO: 64 and SEQ ID NO: 65;     -   b. the mixture of (a) further mixed with CpG ODN; and     -   c. Adjuphos.

-   (13) A pharmaceutical composition comprising:     -   a. an Aβ peptide immunogen construct comprising a mixture of SEQ         ID NO: 64 and SEQ ID NO: 65;     -   b. the mixture of (a) further mixed with CpG ODN; and     -   c. Alhydrogel.

-   (14) A method of reducing the severity or delaying onset of dementia     in humans comprising administering the pharmaceutical composition     of (13) to the human.

-   (15) A method of reducing the severity or delaying onset of dementia     in humans comprising administering the pharmaceutical composition     of (13) to the human at a dose of 300 μg/0.5 mL/dose.

-   (16) A method of reducing the severity or delaying onset of dementia     in humans comprising:     -   a. administering the pharmaceutical composition of (13) to the         human at a dose of 300 μg/0.5 mL/dose; and     -   b. dosing at 0, 4, and 12 weeks as prime.

-   (17) A method of reducing the severity or delaying onset of dementia     in humans comprising:     -   a. administering the pharmaceutical composition of (13) to the         human at a dose of 300 μg/0.5 mL/dose;     -   b. dosing at 0, 4, and 12 weeks as prime; and     -   c. boosting after the step in (b) at once every 3 months, and/or         once every 6 months, and/or once every 12 months.

-   (18) The method of any of (14)-(17) wherein the administration is by     intramuscular injection.

-   (19) The method of any of (14)-(18) wherein the human has mild AD,     MCI, or does not display signs or symptoms of AD but is over the age     of 60.

-   (20) The method of (19) wherein administration to the human is as     follows:     -   a. if the human has mild AD, administration is for the treatment         of AD;     -   b. if the human has MCI, administration is for the prevention         and/or reduction of the severity of and/or the delay in the         onset of dementia; and     -   c. if the human does not display signs or symptoms of AD but is         over the age of 60, administration is for the prevention and/or         reduction of the severity of and/or the delay in the onset of         dementia.

-   (21) The AD vaccine according any of (2)-(10), wherein the peptide     antigen in (a) is mixed with an oligonucleotide CpG to form a     stabilized immunostimulatory complex.

-   (22) The AD vaccine according to the above, wherein the Aβ peptide     immunogen construct in (a) comprises the amino acid sequence of SEQ     ID NOs: 17 to 20.

-   (23) The AD vaccine according to the above, wherein the Aβ peptide     immunogen construct in (a) comprises the amino acid sequence of SEQ     ID NOs: 19 and 20.

-   (24) The AD vaccine according to the above, wherein the total amount     of peptide antigen in     -   (a) is between about 10 μg to about 1 mg per dose.

-   (25) The AD vaccine according to the above, wherein the delivery     vehicle or adjuvant is selected from the group consisting of     Montanide ISA 50V, Polyoxyethylene (20) sorbitan monooleate,     Emulsigen, Emulsigen D, and a CpG oligonucleotide.

-   (26) A method of reducing the severity or delaying onset of dementia     in human patients comprising administering a vaccine formulation     according to any of the above.

-   (27) The method according to any of the above wherein the dementia     is dementia of the Alzheimer's type or vascular dementia with     amyloid angiopathy.

-   (28) The method according to any of the above wherein the dementia     is dementia associated with Parkinson's disease or Lewy Body     dementia.

-   (29) The method according to any of the above, wherein said vaccine     formulation is administered in an aqueous solution comprising     between 10 μg and 1000 μg per dose to patients at risk for, or with,     AD. Also acceptable is 100 to 750 μg per dose or 300 μg per dose.     300 μg can be the target dose used in clinical trial with efficacy.

-   (30) Administration can be once every 3 months and/or once every 6     months and/or once every 12 months.

-   (31) Administration can be based on antibody titer to decide the     frequency of vaccine administration.

-   (32) The method according to any of the above, wherein the patients     are at risk of developing Alzheimer's disease and further wherein     the patients are selected from the group consisting of patients with     mild cognitive impairment, patients with genotypes known to be     associated with Alzheimer's Disease, patients with Trisomy 21 and     patients with surrogate markers indicating risk for Alzheimer's     Disease.

-   (33) The method according to any of the above, wherein the patients     with genotypes known to be associated with Alzheimer's Disease     comprise patients with the ApoE4 genotype.

-   (34) The method according to any of the above, wherein the vaccine     formulation comprising Aβ peptide immunogen construct in (a) and     combination thereof is administered for the initial priming of three     doses at 0, 4 and 12 weeks at 300 μg/0.5 mL per dose.

-   (35) The method according to any of the above, wherein the vaccine     formulation is administered about once every three months, then once     every 6 months and then once every 12 months.

-   (36) The method according to any of the above, wherein the B cells     from the blood of patients previously receiving the vaccine     formulation are used for preparation and selection of human     monoclonal antibodies targeting N-terminus of Aβ peptide for the     prevention and treatment of AD.

-   (37) A method for eliciting an immune response in an subject     comprising providing a priming immunization at 0, 4 and 12 weeks     from initial injection followed by boost immunization at once 3     month, once 6 month, and most preferably once every 12 month.

-   (38) Dosing can be performed at 10 μg to 1000 μg per dose,     preferably 100 μg to 750 μg, even more preferably 300 μg per dose.

-   (39) Route for administration of any of the above can be by any     standard route known in the art, such as intramuscular route,     subcutaneous, oral, etc.

A pharmaceutical composition that is useful as an Aβ peptide immunogen construct vaccine formulation, contains an Aβ peptide immunogen construct and an acceptable delivery vehicle or adjuvant, wherein the Aβ peptide immunogen construct has an amino acid sequence selected from the group consisting of:

-   -   a) SEQ ID NOs: 49-51, 54, 55, and 57 to 65;     -   b) a homologue of (a);     -   c) an antigenically and immunologically functional analogue         of (a) or (b),     -   d) (a), (b), or (c) having at least one conservative amino acid         substitution, amino acid addition, and/or amino acid deletion;         and     -   e) any combination of (a)-(d).

In a specific formulation, the Aβ peptide immunogen construct is selected from the group consisting of SEQ ID NOs: 62 and 63 and mixtures thereof.

In another specific formulation, the Aβ peptide immunogen construct is selected from the group consisting of SEQ ID NOs: 64 and 65 and mixtures thereof.

Other formulations further contain an equimolar mixture of a specific formulation, the Aβ peptide immunogen construct is selected from the group consisting of SEQ ID NOs: 62 and 63. Other formulations further contain an equimolar mixture of a specific formulation, the Aβ peptide immunogen construct is selected from the group consisting of SEQ ID NOs: 64 and 65.

In a specific formulation, the amount of the equimolar mixture of SEQ ID NOs: 62 and 63 (or 64 and 65) is between about 1 μg to about 1000 μg per dose.

In a specific formulation, the amount of the equimolar mixture of SEQ ID NOs: 62 and 63 (or 64 and 65) is between about 100 μg to about 750 μg per dose.

In a specific formulation, the amount of the equimolar mixture of SEQ ID NOs: 62 and 63 (or 64 and 65) is between about 300μg per dose.

The efficacy of the peptide composition of the present invention can be established by injecting an animal, for example, guinea pigs, baboons, Cynomolgus macaques, or humans with an immunogenic composition comprising peptides of the invention. See, Tables 4, 5, 6, 7 and 8 SEQ ID NOs: 48 to 65. The humoral immune response is directed to the N-terminal fragment of Aβ₁₋₄₂ peptide from about 10 to about 14 amino acid residues. A detailed description of the procedures used is provided in the Examples.

The following examples serve to illustrate the present invention and are not to be used to limit the scope of the invention.

Example 1 Synthesis of Amyloid Beta (Aβ) Related Peptides

Methods for synthesizing designer Aβ related peptide constructs that were included in the development effort for an efficacious targeting Aβ vaccine design and formulation are described. The peptides can be synthesized in small-scale amounts, which are useful for laboratory pilot and field studies, as well as large-scale (kilogram) amounts, which are useful for industrial commercial production of vaccine formulations and serological assays.

A large repertoire of Aβ related antigenic peptides having sequences with lengths from approximately 10 to 40 amino acids were designed for the screening and selection of the most optimal peptide constructs for use in an efficacious AD vaccine. Representative Aβ₁₋₄₀, Aβ₁₋₄₂ peptides, N-terminus Aβ peptide fragments Aβ₁₋₂₈, Aβ₁₋₁₄, Aβ₁₋₁₀, Aβ₁₅₋₄₂ and 10-mer peptide employed for epitope mapping in various serological assays are identified in Table 1 (SEQ ID NOs: 1 to 32). Each construct contains an Aβ peptide fragment (Aβ₁₋₁₀ to Aβ₁₋₁₄) synthetically links to a carefully designed helper T cell (Th) epitope derived from pathogen proteins including Measles Virus Fusion protein (MVF) and Hepatitis B Surface Antigen protein (HBsAg), identified in Table 2 (SEQ ID NOs: 33 to 47) either in a single sequence (SEQ ID NOs: 33 to 41, 46, 47) or a combinatorial library (SEQ ID NOs: 42 to 45) to enhance the immunogenicity of their respective Aβ peptide immunogen constructs. Eighteen representative Aβ peptide immunogen constructs selected from over 100 peptide constructs are identified in Table 3 (SEQ ID NOs: 48 to 65).

All peptides used for immunogenicity studies or related serological tests for detection and/or measurement of anti-Aβ antibodies were synthesized on a small scale using Fmoc chemistry by peptide synthesizers of Applied BioSystems Models 430A, 431 and/or 433. Each peptide was produced by an independent synthesis on a solid-phase support, with Fmoc protection at the N-terminus and side chain protecting groups of trifunctional amino acids. Completed peptides were cleaved from the solid support and side chain protecting groups were removed by 90% Trifluoroacetic acid (TFA). Synthetic peptide preparations were evaluated by Matrix-Assisted Laser Desorption/Ionization-Time-Of-Flight (MALDI-TOF) Mass Spectrometry to ensure correct amino acid content. Each synthetic peptide was also evaluated by Reverse Phase HPLC (RP-HPLC) to confirm the synthesis profile and concentration of the preparation.

Despite rigorous control of the synthesis process (including stepwise monitoring the coupling efficiency), peptide analogues were also produced due to unintended events during elongation cycles, including amino acid insertion, deletion, substitution, and premature termination. Thus, synthesized preparations typically included multiple peptide analogues along with the targeted peptide. Despite the inclusion of such unintended peptide analogues, the resulting synthesized peptide preparations were nevertheless suitable for use in immunological applications including immunodiagnosis (as antibody capture antigens) and vaccination (as peptide immunogens). Typically, such peptide analogues, either intentionally designed or generated through synthetic process as a mixture of byproducts, are frequently as effective as a purified preparation of the desired peptide, as long as a discerning QC procedure is developed to monitor both the manufacturing process and the product evaluation process to guarantee the reproducibility and efficacy of the final product employing these peptides. Large scale peptide syntheses in the multi-hundred to kilo gram quantities were conducted on a customized automated peptide synthesizer UBI2003 at 15 mmole to 50 mmole scale.

For active ingredients used in the final vaccine formulation for clinical trials, Aβ peptide constructs were purified by preparative RP-HPLC under a shallow elution gradient and characterized by MALDI-TOF mass spectrometry, amino acid analysis and RP-HPLC for purity and identity.

Example 2 Serological Assays and Reagents

Serological assays and reagents for evaluating functional immunogenicity of the synthetic peptide constructs and formulations thereof are described in details below.

a. Aβ₁₋₄₂, Aβ₁₋₄₀, Aβ₁₋₂₈, or Aβ₁₋₁₄ Peptide-Based ELISA Tests for Antibody Specificity Analysis

ELISA assays for evaluating immune serum samples described in the following Examples were developed and described below.

The wells of 96-well plates were coated individually for 1 hour at 37° C. with 100 μL of target peptide Aβ₁₋₄₂, Aβ₁₋₄₀, Aβ₁₋₂₈, or Aβ₁₋₁₄ (SEQ ID NOs: 1 to 4), at 2 μg/mL (unless noted otherwise), in 10 mM NaHCO₃ buffer, pH 9.5 (unless noted otherwise).

The peptide-coated wells were incubated with 250 μL of 3% by weight of gelatin in PBS in 37° C. for 1 hour to block non-specific protein binding sites, followed by three washes with PBS containing 0.05% by volume of TWEEN® 20 and dried. Sera to be analyzed were diluted 1:20 (unless noted otherwise) with PBS containing 20% by volume normal goat serum, 1% by weight gelatin and 0.05% by volume TWEEN® 20. One hundred microliters (100 μL) of the diluted specimens (e.g., serum, plasma) were added to each of the wells and allowed to react for 60 minutes at 37° C.

The wells were then washed six times with 0.05% by volume TWEEN® 20 in PBS in order to remove unbound antibodies. Horseradish peroxidase (HRP)-conjugated species (e.g., mouse, guinea pig, or human) specific goat anti-IgG, was used as a labeled tracer to bind with the antibody/peptide antigen complex formed in positive wells. One hundred microliters of the peroxidase-labeled goat anti-IgG, at a pre-titered optimal dilution and in 1% by volume normal goat serum with 0.05% by volume TWEEN® 20 in PBS, was added to each well and incubated at 37° C. for another 30 minutes. The wells were washed six times with 0.05% by volume TWEEN® 20 in PBS to remove unbound antibody and reacted with 100 μL of the substrate mixture containing 0.04% by weight 3′,3′,5′,5′-Tetramethylbenzidine (TMB) and 0.12% by volume hydrogen peroxide in sodium citrate buffer for another 15 minutes. This substrate mixture was used to detect the peroxidase label by forming a colored product. Reactions were stopped by the addition of 100 μL of 1.0M H₂SO₄ and absorbance at 450 nm (A₄₅₀) determined. For baboon and macaque Ig/IgG detection, HRP-conjugated goat anti-human IgG reagents with high cross-reactivity to the primate IgG was used as the tracer. For clinical samples from patients entering the trials, HRP-conjugated Protein A/G reagents, optimally titered in previously validated ELISA test kits, were used for serum titer determination. For the determination of antibody titers of the vaccinated animals that received the various Aβ peptide vaccine formulations, 10-fold serial dilutions of sera from 1:100 to 1:10,000 were tested, and the titer of a tested serum, expressed as Log₁₀, was calculated by linear regression analysis of the A₄₅₀ with the cutoff A₄₅₀ set at 0.5

b. Assessment of Antibody Reactivity Towards the Helper T Cell Epitopes on the Carrier Protein, Th Peptide or Th Combinatorial Peptide Library by Specific Carrier Protein, Th Peptide or Th Combinatorial Library Based ELISA Tests

The wells of 96-well ELISA plates were coated individually for 1 hour at 37° C. with 100 μL of carrier protein such as KLH (Keyhole limpet hemocyanin), Th peptide or Th combinatorial peptide library (SEQ ID NOs: 44 to 47), at 2 μg/mL (unless noted otherwise), in 10 mM NaHCO₃ buffer, pH 9.5 (unless noted otherwise) in similar ELISAs and performed as described above. For the determination of antibody titers of the vaccinated animals that received the various Aβ peptide vaccine formulations, 10-fold serial dilutions of sera from 1:100 to 1:10,000 were tested, and the titer of a tested serum, expressed as Log₁₀, was calculated by linear regression analysis of the A₄₅₀ with the cutoff A₄₅₀ set at 0.5.

c. Assessment of Fine Specificity Analysis and Epitope Mapping Towards Aβ and hAPP (Human Amyloid Precursor Protein) by B Cell Epitope Cluster 10-Mer Peptide-Based ELISA Tests

Fine specificity analyses of anti-Aβ antibodies in immunized hosts or vaccines were determined by epitope mapping. Briefly, the wells of 96-well plates were coated with individual hAPP 10-mer peptides (SEQ ID NOs: 6, 8 to 30) at 0.5 μg per 0.1 mL per well and then 100 μL serum samples (1:100 dilution in PBS) were incubated in 10-mer plate wells in duplicate following the steps of the antibody ELISA method described above. The B cell epitope of the vaccine and related fine specificity analyses of baboon, macaque and human anti-Aβ antibodies in immunized hosts were also pre-absorbed with Aβ₁₋₁₀ peptide (DAEFRHDSGY, SEQ ID NO: 6), Aβ-modified synthetic peptides with substitutions at the N-terminus, or with non-relevant control peptide and then tested by anti-Aβ₁₋₂₈ ELISA test for additional specificity confirmation.

d. Immunogenicity Evaluation

Preimmune and immune serum samples from human subjects or animals were collected according to experimental vaccination protocols and heated at 56° C. for 30 minutes to inactivate serum complement factors. Following the administration of the vaccine formulations, blood samples were obtained according to protocols and their immunogenicity against specific target site(s) evaluated. Serially diluted sera were tested and positive titers were expressed as Log₁₀ of the reciprocal dilution Immunogenicity of a particular vaccine formulation is assessed by its ability to elicit high titer B cell antibody response directed against the desired epitope specificity within the target antigen while maintaining a low to negligible antibody reactivity towards the “Helper T cell epitopes” employed to provide enhancement of the desired B cell responses.

e. Solid-Phase Enzyme-Linked Immunoassay for Detection of AB Related Peptide Antigens in Blood and Cerebral Spinal Fluid (CSF)

A high sensitivity Aβ₁₋₄₀ immunoassay (Invitrogen™—BioSource™ Cytokines & Signaling, Camarillo, Calif., USA) was used to determine the concentration of Aβ₁₋₄₀ in serum, plasma and CSF in Cynomolgus macaques following kit instructions. The Aβ₁₋₄₂ levels were below detection limits in normal macaques. Aβ₁₋₄₀ and Aβ₁₋₄₂ levels in plasma, CSF and chemical extractions of brain tissue from hAPP751 transgenic mice were determined following instructions of Aβ₁₋₄₀ and Aβ₁₋₄₂ immunoassay (The Genetics Company Inc., Zurich-Schlieren, Switzerland). Quantification of Aβ₁₋₄₀ levels in plasma of individuals with mild to moderate Alzheimer's disease was determined following kit instructions (Human Amyloid β (1-40) Assay Kit, IBL, 27714). The Aβ₁₋₄₂ levels in human plasma were below detection limits.

Example 3 Immunohistochemical Analysis

Normal adult human tissues (PhenoPath Laboratories Inc., Seattle, Wash., USA) and brain specimens from cases with Alzheimer's disease (Dr. Felicia Gaskin, University of Virginia, Charlottesville, Va., USA) were obtained from postmortem and/or surgical pathology specimens. Cynomolgus macaque tissue specimens (Beijing Jo-Inn New Drug Research Center, Beijing, China) and hAPP transgenic mouse brain specimens (JSW-Research GmbH, Graz, Austria) were obtained at necropsy. Tissues were either snap-frozen in liquid nitrogen, submerged in cold OCT embedding compound and cryo-sectioned or they were formalin-fixed, paraffin-embedded and sections prepared by standard procedures.

Indirect immunofluorescence analysis of cryopreserved tissue sections were performed with preimmune and hyperimmune serum or purified IgG from guinea pigs, hAPP transgenic mice, baboons and macaques or with commercially available murine monoclonal antibodies and fluorochrome-conjugated secondary antibodies. Indirect immunoperoxidase staining using an avidin-biotin enhanced commercially available kit was performed on cryopreserved tissue sections of normal adult tissues using purified guinea pig anti-Aβ IgG, or on brain sections from control and UBI AD vaccine (UB-311) treated macaques using commercially available monoclonal antibodies detecting CD3, CD4, CD8 (T lymphocyte subsets), CD11b (microglial cell activation marker), GFAP (astrocytes) and specific Aβ epitopes. The immunohistochemical analyses were conducted according to standard pathology laboratory procedures.

Example 4 T Cell Functional Assays for Lymphocyte Proliferation and Cytokine Production

The procedures for T cell functional assays including lymphocyte proliferation and cytokine production for assessment of T cell activation are described in detail as follows.

a. Isolation, Freezing, and Defrosting of Peripheral Blood Mononuclear Cells (PBMC)

Heparinized blood was collected, and PBMC were isolated by Ficoll-Hypaque density gradient centrifugation. After two washes in phosphate-buffered saline (PBS), PBMC were resuspended in cell culture medium consisting of RPMI 1640 supplemented with 10% fetal calf serum (FCS). For some experiments, isolated PBMC were frozen, stored in liquid N₂, and defrosted for subsequent in vitro cultivation.

b. T Cell and Peripheral Blood Mononuclear Cell (PBMC) Proliferation Assay

PBMC from vaccinated animals were cultured at 2.5×10⁶ cells/mL in individual wells of a 24-well culture plate (Nunc) in the presence of 10.0 μg of the selected vaccine immunogen composition. Negative control cultures containing PBMC alone without stimulating antigen were also included. All cultures were kept at 37° C. for 3 days in a 5.0% CO₂ incubator. Supernatants were collected 3 days after culture initiation, and individual cytokines were measured using the quantitative assay described above.

Peripheral blood mononuclear cells (PBMC) from baboons and from Cynomolgus macaques were isolated by Ficoll-hypaque gradient centrifugation. For peptide-induced proliferation and cytokine production, cells (2×10⁵ cells per well) were cultured alone or with individual peptide domains added (including, Aβ₁₋₄₂, Aβ₁₋₁₄, Aβ₁₅₋₄₂, Th peptides, and non-relevant peptide as a negative control). Mitogens (PHA, PWM, Con A) were used as positive controls. On day 6, 1 μCi of ³H-thymidine (³H-TdR) was added to each of three replicate cell culture wells. After 18 hours of incubation, cells were harvested and ³H-TdR incorporation was determined. The stimulation index (S.I.) represents the counts per minute (cpm) in the presence of antigen divided by the cpm in the absence of antigen; a S.I. >3.0 was considered significant.

c. Evaluation of Cytokines Produced by PBMC Cultures Pre- and Post-Immunization with UBI AD Vaccine

Cytokine analyses (IL-2, IL-6, IL-10, IL-13, TNF-α, IFN-γ) from Cynomolgus macaque PMBC cultures were performed on aliquots of culture medium alone or in the presence of various Aβ peptide domains or mitogens. Monkey-specific cytokine sandwich ELISA test kits (U-CyTech Biosciences, Utrecht, The Netherlands) were used to determine the concentration of individual cytokines following kit instructions.

Example 5 Animals Used in Safety, Immunogenicity, Toxicity and Efficacy Studies

Guinea Pigs:

Immunogenicity studies were conducted in mature, naïve, adult male and female Duncan-Hartley guinea pigs (300-350 g/BW). The experiments utilized at least 3 Guinea pigs per group. Protocols involving Duncan-Hartley guinea pigs (8-12 weeks of age; Covance Research Laboratories, Denver, Pa., USA), were performed under approved IACUC applications at the contracted animal facility as well as at UBI, as sponsor.

Anubis Baboons:

Immunogenicity studies in adult male baboons (Papio anubis, 8 to 10 years of age; University of Oklahoma Health Sciences Center, Oklahoma City, Okla., USA) were conducted under approved IACUC applications at the contracted animal facility as well as at UBI, as sponsor.

Cynomolgus Macaques:

Immunogenicity and repeated dose toxicity studies in adult male and female monkeys (Macaca fascicularis, approximately 4 years of age; Beijing Jo-Inn New Drug Research Center, Beijing, China) were conducted under approved IACUC applications at the contracted animal facility as well as at UBI, as sponsor.

hAPP751 Transgenic Mice:

Immunogenicity and efficacy studies in young hAPP751 transgenic (tg+) mice and their littermates (14±2 weeks of age) were used in a prevention model for Alzheimer's disease and aged tg+ mice and their littermates (52+2 weeks of age) were used in a therapeutic model. Both studies were performed under approved IACUC applications at the contracted animal facility (JSW Research GmbH, Graz, Austria) as well as at UBI, as sponsor.

The hAPP751 tg+ mice constitutively overexpress human amyloid precursor protein (hAPP) containing the London (V717I) and Swedish (K670M/N671L) double mutations, under the regulatory control of the murine Thy-1 promoter (Rockenstein, E, et al., 1995 and 2001). The Aβ₁₋₄₂ deposition occurs as early as 3 to 4 months of age with the appearance of mature plaques in the frontal cortex and at 5 to 7 months of age, plaque formation extends to the hippocampus, thalamus and olfactory region in the hAPP751 tg+ mice. The effects of intramuscular vaccinations over a 16 week period were observed for antibody response by ELISA assay of serum, and for brain amyloid deposition and brain plaque load, as well as for evidence of increased levels of cellular reactivity (e.g., T cell infiltration, microglial cell activation) in the brain by immunostaining and by biochemical extractions.

Prior to immunization, serum and/or plasma samples from individual animals were tested for the presence of Aβ target peptides according to methods described above in this Example. Each animal was immunized with Aβ target peptide constructs per dose of the vaccine formulations, depending on species and protocol.

Example 6 General Vaccine Formulation for Initial Ranking of the Immunogenicity of Aβ Peptide Constructs in Guinea Pigs and Baboons

Pharmaceutical compositions and vaccine formulations used in each experiment are described in greater detail in the Examples described below. Briefly, the formulations specified in each of the study groups generally contained all types of designer Aβ peptide constructs with a fragment of the Aβ peptide linked via different type of spacers (e.g., εK or εK with KKK to enhance the peptide construct's solubility) and variations of promiscuous helper T cell epitopes including two sets of artificial T helper epitopes derived from Measles virus fusion protein and Hepatitis B surface antigen with the Aβ peptide fragment(s) linked at the N-terminus of the designer peptide constructs. Over 100 designer Aβ peptide constructs were initially evaluated in guinea pigs for their relative immunogenicity with the full length Aβ₁₋₄₂ and further their cross-reactivity with the native plaques from the brain sections of AD patients. The Aβ peptide constructs were prepared in a water-in-oil emulsion with Seppic Montanide™ ISA 51 as the approved oil for human vaccine use, mixed with mineral salts or Alhydrogel (Alum) at varying amounts of peptide constructs as specified. Vaccines were usually prepared by dissolving the Aβ peptide constructs in water at about 20 to 800 μg/mL and formulated with Montanide™ ISA 51 into water-in-oil emulsions (1:1 in volume) or with mineral salts or Alhydrogel (Alum) (1:1 in volume). The vaccine formulations were kept at room temperature for about 30 minutes and mixed by vortex for about 10 to 15 seconds prior to immunization.

Some animals were immunized with 2 to 3 doses of a specific vaccine formulation, which were administered at time 0 (prime) and 3 week post initial immunization (wpi) (booster), optionally 5 or 6 wpi for a second boost, by intramuscular route. These immunized animals were then tested to evaluate the immunogenicity of the various synthetic Aβ peptide immunogens present in the vaccine formulation as well as their cross-reactivity with Aβ₁₋₂₈ and the full length Aβ₁₋₄₂. Those Aβ peptide immunogens with potent immunogenicity in the initial screening in guinea pigs were then further tested in both water-in-oil emulsion, mineral salts, and alum-based formulations in baboons, which species has been calibrated as having similar immune response profile as that of humans, for dosing regimens over a specified period as dictated by the immunizations protocols.

Only the most promising Aβ peptide immunogen candidates were further assessed extensively prior to being incorporated into final vaccine formulations for immunogenicity, duration, toxicity and efficacy studies in GLP guided preclinical studies in preparation for submission of an Investigational New Drug application and clinical trials in patients with Alzheimer's disease.

Example 7 Design Rationale, Screening, Identification and Optimization of Multi-Component Vaccine Formulations Incorporating Aβ₁₋₁₄ Peptide Immunogen Constructs for Prevention and Treatment of Dementia of Alzheimer's Type

Design History:

Each vaccine or immunotherapeutic product requires its own design focus and approach based on the specific disease mechanism and the target protein(s) required for intervention. The targets that designs are modeled after can include cellular proteins involved in a disease pathway or an infectious agent in which several proteins from the pathogen may be involved. The process from research to commercialization is a very long process typically requires one or more decades to accomplish.

An extensive process of serological validation is required once the target molecule is selected. Identification and distribution of the B cell and T cell epitopes within the target molecule is important to the molecular vaccine design. Once the target B cell is recognized, consecutive pilot immunogenicity studies in small animals are conducted to evaluate the functional properties of the antibodies elicited by the vaccine formulations of the designer peptides. Such serological application is then carried out in animals of the target species for further validation of the vaccine immunogenicity and functional properties of the elicited antibodies. All studies are conducted in multiple parallel groups with sera collected from the immunized hosts for evaluation. Early immunogenicity studies in the target species or in non-human primate in the case of human vaccines, are also carried out to further validate the immunogenicity and direction of the design. Target peptides are then prepared in varying mixtures to evaluate subtle difference in functional property related to the respective interactions among peptide constructs when used in combinations to prepare for respective formulation designs. After additional evaluations, the final peptide constructs, peptide compositions and formulations thereof, along with the respective physical parameters of the formulations are established leading to the final product development process.

Extensive design experience allows for the development of the next generation vaccine products from discovery to commercialization as shown in FIG. 1 at an accelerated pace.

a. Design and Validation of Suitable Aβ₁₋₁₄ Derived Peptide Constructs for Vaccine Formulations with Potential to Treat Patients with Alzheimer's Disease

As a follow up to the previous invention disclosed by this inventor (Wang C Y. U.S. Pat. No. 6,906,169, United States: United Biomedical Inc.; 2005; Wang C Y. U.S. Pat. No. 7,951,909, United States: United Biomedical Inc.; 2011; Wang C Y. U.S. Pat. No. 8,232,373, United States: United Biomedical Inc.; 2012).), further refinement of the B cell epitope from the Aβ molecule settled on a Aβ₁₋₁₄ peptide devoid of the C-terminal domain of the sequence which express autologous T helper epitopes frequently present in patients of Alzheimer's disease that could cause severe side effect, such as meningoencephalitis, was selected as the target B cell epitope in the design for incorporation into the vaccine formulations.

In order to generate the most potent peptide constructs for incorporation into the vaccine formulations, a large repertoire of promiscuous T helper epitopes derived from various pathogens or artificially T helper epitopes further designed from Measles Virus Fusion (MVF) protein sequence or Hepatitis B Surface Antigen (HBsAg) protein were made into immunogenicity studies in guinea pigs. A representative study of 16 Aβ₁₋₁₄ derived peptide constructs as shown in Table 3 (SEQ ID NOs: 48, 51 to 65) where Aβ₁₋₁₄ peptide was linked through εK as spacer with individual promiscuous T helper epitopes. The peptide immunogen constructs were formulated into Montanide™ ISA 51 water-in-oil emulsions and tested in guinea pigs for their respective immunogenicity by administering the respective vaccine formulations prepared at 100 μg/0.5 mL in a standard ISA 51 emulsion for a prime at 0 wpi and a boost at 3 wpi. Preliminary immunogenicity analysis confirmed the presence of a helper T cell epitope structure feature in the C-terminus of Aβ₁₋₄₂ where deletion of peptide sequence from amino acids 15 to 28 of the Aβ sequence rendered Aβ₁₋₁₄ sequence non-immunogenic on its own (Table 4, Groups 1 to 3). Preliminary ranking of the T helper epitopes used to restore and enhance the immunogenicity of the Aβ₁₋₁₄ peptide's immunogenicity in increasing order is shown in Table 4 with the weakest peptide construct listed first: Schistosoma mansoni Th (SEQ ID NO: 56)<Clostridium tetani1 Th (SEQ ID NO: 48)<Bordetella pertussis Th (SEQ ID NO: 52)<Clostridium tetani2 Th (SEQ ID NO: 53)<Diphtheria Th (SEQ ID NO: 54)<Plasmodium falciparum Th (SEQ ID NO: 55) with Cholera toxin Th (SEQ ID NO: 57) being ranked amongst those artificial T helper epitope derived from MVF (SEQ ID NOs: 51, 58, 59) and HBsAg (SEQ ID NO: 60). The Aβ₁₋₁₄ derived peptide construct (SEQ ID NO: 51) can also be designed as a branched tetrameric structure as shown in (SEQ ID NO: 61) as a potent peptide immunogen construct. In summary, the above immunogenicity study validated the suitability of specific Aβ₁₋₁₄ derived constructs (SEQ ID NOs: 51, 57 to 61) as immunogen for use in the design of the final vaccine formulation for eliciting antibodies directed at the N-terminus of the full length Aβ₁₋₄₂ peptide, a major biochemical component of the senile plaques of patients with AD.

b. Broadening of MHC Coverage by Using Aβ₁₋₁₄ Derived Constructs with Different Promiscuous T Helper Epitopes

When designing a vaccine to treat patients of diverse genetic background, it is important to allow the design to cover maximal population with diverse genetic background. It was therefore explored for synergistic immunogenicity effect of Aβ₁₋₁₄ derived peptide immunogen constructs for such a combination. Since promiscuous T helper epitopes derived from MVF and HBsAg represent amongst the most potent ones to provide such immunogenicity enhancement, combination of peptide constructs containing these two helper T epitopes were therefore designed for such exploration. Combinatorial library forms of T helper epitopes for both MVF and HBsAg (SEQ ID NOs: 44 and 45) were designed as shown in Table 2, with maximal MHC binding motif coverage in mind, into Aβ₁₋₁₄ derived constructs (SEQ ID NOs: 62 and 63) and they, individually or in combination, were evaluated for immunogenicity in guinea pigs following a prime (0 wpi) and two boosts (3 and 5 wpi) schedule at a 100 μg/0.5 mL per dose. As shown in Table 5, a mixture of the two immunogens at equal ratio by weight, did elicit a respectable immune response when compared to that elicited by the respective individual peptide construct.

c. Simple Immunogen Design Incorporating Target B Epitope Linked to Carefully Selected T Helper Epitopes with Multiple MHC Binding Motifs Generate a Focused and Clean Immune Response Targeted Only to the B Cell Epitope

Hyperimmune sera 8 weeks post initial immunization (wpi) were collected from the immunized hosts for testing with the respective T helper epitopes used for B epitope immunogenicity enhancement. Hyperimmune sera from similar immunized hosts which were given a similar prime and boost immunization schedule of a KLH-linked Aβ₁₋₁₄ peptide which was prepared through chemical coupling with an added Cysteine residue at the N-terminus of the Aβ₁₋₁₄ peptide. As can be seen from Table 6, all hosts immunized with the designer Aβ₁₋₁₄ peptide immunogen constructs (SEQ ID NOs: 62 and 63) either alone or in combination generated the desired high titers of anti-Aβ₁₋₁₄ antibody crossreactivity towards the targeted Aβ₁₋₄₂ crossreactivity while little or no reactivity was generated against the two T helper epitopes (SEQ ID NOs: 44 and 45). In contrast, despite the relative immunogenicity generated by the conventional carrier protein KLH to the Aβ₁₋₁₄ epitope (Log₁₀) titers from 2.2 to 3.9), a very high antibody response directed at the protein carrier KLH was generated by all animals with very high titers (GeoMean of the Log₁₀) titer at 6.2), again validated prior observation in that a unique “focused” response directed at the “Targeted B cell epitope” was the outcome of immunization with these rationally designed peptide immunogen constructs based on understanding of the structure and function of the B cell and T cell epitopes.

d. Assessment of Immunogenicity in Baboons after Prime (0 Wpi) and Boosts (3 and 6 Wpi) of Vaccine Formulations Containing Varying Amounts of Aβ₁₋₁₄ Constructs (SEQ ID NOs: 62 and 63) in ISA 51 Water-in-Oil Emulsion and in Alum

Prior to moving into further development work to explore the functional properties of the antibodies elicited by these Aβ₁₋₁₄ peptide immunogen constructs, an assessment of the relative immunogenicity of vaccine formulations incorporating these peptide constructs (SEQ ID NOs: 62 and 63 at an equimolar ratio) at varying amounts in two different formulations most frequently used in human testing were assessed in baboons, the animal species which generates immune responses most resemble that of humans in scale. All vaccine formulations were given to the animals in 0.5 mL per dose. The original targeted dose for future use was at 100 μg/mL thus three animals were given at this dose. An assessment for the relative immunogenicity between the more potent ISA 51 water-in-oil formulation versus the weaker yet most frequently used adjuvant Alum at the same 100 μg was also assessed. In the water-in-oil emulsion system tested, a dosing escalation study with 25 μg, 100 μg and 400 μg per dose was assessed. The first observation from this study was the lowered immune responses (by more than one Log₁₀ in antibody titers) generated by the Alum-based formulation when compared to the ISA water-in-oil emulsion formulation with same peptide immunogen content given at 100 μg in 0.5 mL per dose. Although 100 μg per dose was the originally targeted amount for future vaccine formulation administration in immunized hosts, an increase of the immune response was observed with an increase of dosing from 25 μg, to 100 μg to 400 μg respectively as shown in Table 7. Therefore for designer Aβ₁₋₁₄ peptide immunogen constructs (SEQ ID NOs: 62 and 63) or peptide immunogen constructs of their analogues, doses beyond 100 ug would be further explored.

Example 8 Criteria for the Development of a Successful Immunotherapeutic Vaccine for the Treatment of Dementia of Alzheimer's Type

UBI's strategy to develop an immunotherapeutic vaccine includes design of proprietary promiscuous Th epitopes linking to target B sequence based on platform technology to overcome the “self” barrier and limitation of genetic diversity and the development of optimal peptide-based vaccine formulation which are Safe, Unique, Characterizable, Cost-effective, Efficacious, Stable and Scalable (coined as SUCCESS) (Wang C Y, et al., 2005; Sokoll K K, 2004). Special attention was given at the initial design phase to allow the selected peptide immunogens that will enter the development phase of the program for vaccine formulation to be characterizable from regulatory approval standpoint as this vaccine, when proven efficacious in patients after phase III trial, would be the first full synthetic peptide based vaccine ever be given to patients on a multi-million dose basis ever in human history. Special attention in quality design of the peptides, selected out of many which already was proven to yield to respectable desired immune responses, was given to the “solubility” of the individual peptides to be employed, synthetic chemistry yield and purification hurdles inherent in sequence design when coming to the fine details. A well accepted adjuvant with high safety factor would also be an important factor for consideration, out of the many acceptable choices. A balance between the safety factor and the scale of immunogenicity must be considered. And when immunogenicity is compromised due to safety factor, what other vaccine formulation features can be incorporated to further elevate the immune response. Again, the success of a vaccine resides on its ability to generate the desired immune response in as large and wide population with diverse genetic background as possible, thus a broad Major Histocompatibility Complex (MHC) coverage must also be a very important factor for consideration.

In light of the above consideration in order to achieve at a SUCCESS vaccine targeting at the N-terminus of Aβ molecule, peptides of single sequence instead of in combinatorial form will be chosen despite their relatively weaker immunogenicity when compared to their counter part in a combinatorial library format. Peptide solubility is also a key factor for testing since the highly potent immunogenicity enhancing T helper epitopes usually comprise a long stretch of hydrophobic amino acid residues thus renders the corresponding peptides not soluble. Special care must be given as to whether highly charged residues such as Asp, Glu, Lys, and Arg would be added to specific positions to enhance the peptide solubility. In order to achieve high yield in synthesis, the chemistry involved in all synthetic processes along with intermediates generated were all evaluated extensively to arrive at the optimal sequences the final peptide will assume as the key ingredient of the vaccine formulation. After a balanced consideration of all highly qualified peptide candidates from immunogenicity aspects, two Aβ₁₋₁₄ peptide immunogen constructs (SEQ ID NOs: 64 and 65) were selected, with peptide with SEQ ID NO: 64 being from the MVF series and peptide with SEQ ID NO: 65 being from the HBsAg series, and were further analyzed for further exploration in vaccine formulations.

These peptides were synthesized and purified to high purity as shown in FIGS. 2A, 2B, 2E. The HPLC profiles for both peptides of SEQ ID NOs: 65 and 64 under reverse phase analysis with shallow gradient showed elution time of 20 and 21 minutes, respectively. MALDI-TOF analysis of these purified peptides gave a molecular weight of 3892.274 (with a theoretical value of 3892.52) for peptide with SEQ ID NO: 65 and 4374.568 (with theoretical value of 4374.04) for peptide SEQ ID NO: 64, both with high precision, as shown in FIGS. 2C and 2D.

The “Th” peptides of SEQ ID NOs: 46 and 47, both used to enhance the immunogenicity of Aβ₁₋₁₄ were extensively evaluated for their binding motifs in the various populations as shown in FIGS. 3A and 3B. It is safe to incorporate two promiscuous T helper epitopes into the vaccine design in order to allow maximal coverage of the genetic background of all patients. From the percentage coverage analyzed, this vaccine will have a very reasonable chance to cover a large population, if not all, of patients receiving the vaccine, an important factor to justify the extensive testing and development efforts extended to a vaccine of high clinical value.

In order for a vaccine designed to be used by a large population and with prevention also being part of the goal for administration, safety becomes another important factor for consideration. Despite the use of water-in-oil emulsions in humans for many vaccine formulations in clinical trials, Alum remains the major adjuvant for use in vaccine formulations due to its decades of safety testing. Alum or its mineral salts Adjuphos (Aluminum phosphate) were considered for use as adjuvants in preparation for clinical applications.

a. Assessment of Immunogenicity in Guinea Pigs after Prime (0 Wpi) and Boosts (3 and 5 Wpi) of Vaccine Formulations Containing Varying Amounts of Highly Purified Aβ1-14 Peptide Immunogen Constructs (SEQ ID NOs: 64 and 65) with a Fixed Amount of Mineral Salts

After selection of the two highly purified Aβ₁₋₁₄ peptide immunogen constructs (SEQ ID NOs: 64 and 65) out of many immunogenic candidates for development of a UBI AD vaccine for preclinical and clinical testing, a mixture of these two peptides in an equimolar ratio was tested for their immunogenicity in the presence of a fixed amount (0.5 mL) of alum/mineral salts in a dosing study in guinea pigs as shown in FIG. 4. Varying amounts of the peptide mixture containing the above mentioned two Aβ₁₋₁₄ peptide immunogen constructs (SEQ ID NOs: 64 and 65) from On, 10 μg, 30 μg, 100 μg to 300 μg in 0.5 mL of mineral salts (Aluminum phosphate, Adjuphos) were tested in guinea pigs based on an immunization schedule of 0, 3 and 5 wpi (weeks post initial immunization) with the immunogenicity observed for over a 26 weeks period. At peak of the immune response which is around 5 weeks post initial immunization, animals receiving 300 μg per dose gave the highest immune response followed by those receiving 100 μg and 30 μg, then by 10 μg dose with similar immune response ranking throughout the 26 weeks period followed. The highest dose at 300 μg per 0.5 mL Adjuphos is therefore considered an optimal condition for immunization and will be used as a guide to explore immunogenicity in other related formulations in different species.

b. Means to Further Elevate the Immunogenicity of the Vaccine Formulations Through Formation of an Immunostimulatory Complexes (ISC) Between Peptides and Oligonucleotides

Inherent with the use of Alum or its associated mineral salts as adjuvant, the associated vaccine formulation immunogenicity would also be reduced by about one Log₁₀ in titer for their target Aβ₁₋₁₄ B cell epitopes (as estimated in a similar study in Example 7). Means to further elevate the immunogenicity of the vaccine formulation is therefore explored.

More specifically, in UBI formulation as shown in FIG. 5A, a stabilized immunostimulatory complex (ISC) is derived from cationic peptides and a polyanionic CpG oligodeoxynucleotide (ODN) molecule (upper panel) (Sokoll K K, 2004). It is a self-assembling system driven by electrostatic neutralization of charge. Stoichiometry of the molar charge ratio of cationic peptide to anionic oligomer determines extent of association. The non-covalent electrostatic association of peptide immunogens and CpG ODN is a completely reproducible process. The peptide/CpG ODN immunostimulatory complex aggregates which facilitate presentation to the “professional” antigen processing cells (APC) of the immune system thus further enhancing of the immunogenicity of the complexes. These complexes are easily characterized for quality control during manufacturing. The peptide/CpG ISC are well tolerated in vivo.

The immunostimulatory complexes can then be combined with the mineral/aluminum salt adjuvant forming an aqueous suspension as shown in the lower panel of FIG. 5B.

CpG motifs have been characterized as agonists of Toll-like receptor 9 (TLR9), found in a subset of dendritic cells (pDC) and B cells. Toll-like receptors have the ability to recognize the distinct molecular patterns characteristic of common foreign invaders such as bacteria, viruses and parasites. Specifically unmethylated, synthetic CpG sequences are capable of binding to and activating TLR9. As potent B-cell mitogens, TLR9 agonists are effective in inducing strong antibody immune responses. The mechanism of CpG action involves, amongst them, the development of long-lasting antigen specific antibodies.

In view of the AN1792 Aβ₁₋₄₂ peptide vaccine clinical trial which failed both in its immunogenicity in eliciting in only 30% of the patients antibodies directed to the targeted Aβ₁₋₄₂ aggregated vaccine and caused in 6% of patients meningoencephalitis-like side effects, The aluminum-based adjuvants employed in this invention for the UBI AD vaccine are known to stimulate Th-2 type of immune responses (i.e., IL-4 and IL-5 cytokines). In addition, the Aβ peptide immunogen construct/CpG ODN immunostimulatory complexes are particulate. Processing of particulate immunogens is facilitated by APC that biases a Th-2 type of response.

In summary, CpG oligonucleotides have been Safely used in several human clinical trials (>1,000 patients). Peptide/CpG ODN derived immunostimulatory complexes are easily Characterized. Stable under physiological conditions and well tolerated in vivo. CpG-based complexes derived from numerous peptide immunogens alone or in combination with mineral salts have been proven to be Efficacious in mice, guinea pigs, swine, dogs, cattle, baboons and macaques with minimal adverse events reported. Aluminum-based mineral salts are the only adjuvants included in currently licensed vaccines in the USA. Vaccine compositions employing these adjuvants are Cost-effective and known to Scale efficiently. Specific vaccine/adjuvant formulations are licensed vs. adjuvant alone. UBI has explored and developed Unique compositions The above described features of the UBI AD vaccine for treatment of dementia has all the elements required to be a SUCCESS.

Example 9 Formulation of UBI AD Vaccine for Intramuscular Injection

The Aβ₁₋₁₄-εK-KKK-MvF5 Th peptide immunogen construct (SEQ ID NO: 64) and the Aβ₁₋₁₄-εK-HBsAg3 Th peptide immunogen construct (SEQ ID NO: 65), are cationic at physiological pH's. FIGS. 2A, 2B, 2C (left side) illustrates the HPLC profiles of the two peptides alone and in an equal molar ratio mixture. FIGS. 2D and 2E (right side) illustrate the profiles characterized by MALDI-TOF mass spectrometry of the two peptides with a molecular weight (Da) of 3892 and 4374, respectively. The addition of polyanionic CpG ODN results in charge neutralization and immediate “self-assembly” of immunostimulatory complexes (ISC) in solution. Stoichiometry of the molar charge ratios of cationic peptide: anionic CpG determines the degree of association. The UBI AD vaccine was prepared in stages: The ISC was prepared in water-for-injection with an equimolar mixture of the two Aβ peptide immunogen constructs with a molar charge ratio to CpG ODN of about equal.

a. Assessment of Immunogenicity Over a 10-Week Period in Baboons after Prime (0 wpi) and Boosts (3 and 6 wpi) of Vaccine Formulations Containing 300 μg/0.5 mL of Highly Purified Aβ₁₋₁₄ Peptide Immunogen Constructs (SEQ ID NOs: 64 and 65) Forming Immunostimulatory Complexes with CpG Oligomers in the Absence or Presence of Alum or Adjuphos as an Adjuvant

Based on the first level of immunogenicity and dosing study in guinea pigs with the highly purified Aβ₁₋₁₄ peptide immunogen constructs (SEQ ID NOs: 64 and 65), a mixture of 300 μg containing the two Aβ₁₋₁₄ peptide immunogen constructs (SEQ ID NOs: 64 and 65) at an equimolar ratio were prepared as immunostimulatory complexes with CpG oligomers as described above. They were then formulated either with alum or adjuphos, or no adjuvant, for immunization into baboons at 300 μg peptide per dose for intramuscular injection based on a 0, 3, 6 weeks immunization protocol with the specific antibody levels observed over a 10 weeks period. Baboons were used for such immunogenicity assessment and final formulation assessment prior to entering into human trials since this animal species generates immune responses most resembling that of humans in scale. All vaccine formulations were given to the animals in 0.5 mL per dose and two animals per group. As shown in FIG. 6, at 300 μg in 0.5 mL per dose, all three formulations, in the presence or absence of alum or adjuphos as the adjuvant, demonstrated immunogenicity at about the same level, within 0.5 Log₁₀ in scale, as demonstrated by ELISA towards the Aβ₁₋₁₄ peptide. The ISC formulation significantly enhanced the immunogenicity exerted by the peptide alone. However, after observation over an 8 to 10 week period, the formulation supported by Adjuphos maintained a significantly higher immune response when compared to the other two groups, enlarging from 0.5 to 1 Log₁₀) in response scale (i.e., about 3 to 10 fold more potent). Through this careful calibration of the immunogenicity in baboons with three closely related formulations, designed to be of high safety factors by using highly purified rationally designed peptides generating very focused and desired immune responses without any complicating factors from adjuvant, the UBI AD vaccine formulation is therefore finalized for further exploration in primates and humans for immunogenicity, specificity, functional properties related to the elicited antibodies, acute and chronic toxicity, and finally clinical efficacy as illustrated in the following Examples.

b. Preparation of UBI AD Vaccine Formulation for Immunogenicity, Acute Toxicity, Chronic Toxicity, Efficacy, and Clinical Safety, Tolerability and Efficacy Studies.

The ISC was prepared in water-for-injection with an equimolar mixture of the two Aβ peptide immunogen constructs (SEQ ID NOs: 64 and 65) which is further mixed with CpG at a molar charge ratio of peptides to CpG ODN of about equal. The CpG ODN in the UBI AD vaccine formulations are 100% bound to the peptide immunogen constructs in a process mediated by electrostatic neutralization of opposing charge, resulting in the formation of micron-sized particulates. The particulate form allows for a significantly reduced dosage of CpG ODN from the conventional use of CpG adjuvants, less potential for adverse innate immune responses, and facilitates alternative immunogen processing pathways including professional antigen presenting cells (APC). To the preformed ISC was sequentially added the aluminum mineral salt, a saline solution for tonicity and a preservative. Of the Aluminum mineral salts, aluminum phosphate was used instead of Alum gel based on the baboon immunogenicity study results for better sustenance of the immunogenicity.

c. Stability and Immunogenicity Study of the UBI AD Vaccine Formulation

UBI AD vaccine formulation prepared at 300 μg in 0.5 mL per dose with aluminum phosphate (Adjuphos) as the adjuvant with an overage of 20% was prepared as described above and filled in an 1 mL sterile glass vial and stored at 2-8° C. for 2 years. Samples were retrieved according to a stability testing protocol. All physical parameters met quality control (QC) specifications. The Aβ₁₋₁₄ peptide immunogen constructs were decomplexed from the CpG oligodeoxynucleotide (ODN) and the adjuphos adjuvant and analyzed by HPLC according to the analytical specifications for each of the peptides. As shown in the lowest panel on the left of FIG. 2C the two Aβ₁₋₁₄ peptide immunogen constructs (SEQ ID NOs: 64 and 65) revealed an equimolar mixture of the two respective peptides at the expected elution time upon HPLC analysis.

Vials containing UBI AD vaccine formulation were retrieved for immunogenicity study in guinea pigs. Two groups, each having six animals, were tested with one being the vaccine group where 300 μg per dose was given at 0 and 3 wpi while the other group was given placebo vaccine formulation (i.e., the same formulation without the two peptide immunogen constructs). As shown in FIG. 7, significant immunogenicity was achieved by all animals upon single administration reaching a peak response by 5 wpi after a boost at 3 wpi Immune sera taken from 8 wpi were further tested for their reactivity with the respective Th peptides employed to provide the immunogenicity enhancement. As shown in Table 8, little if any reactivity was directed to the Th peptides to further confirm the “Immunosilent” nature of these two Th peptides thus allowing a very focused immune response directed towards exclusively to the N-terminus of the Aβ peptide. The UBI AD vaccine formulation is therefore comprised of well defined chemicals, away from the historic vaccine industry dealing exclusively with the not well characterized biological materials, generating focused immune response as designed, and is more broadly reactive than the monoclonal antibodies thus more effective in efficacy, yet far cleaner than the conventional peptide-carrier conjugated type of vaccines, thus commanding a high safety factor.

Example 10 Immunohistochemical Staining of Human Brain with Alzheimer's Disease to Assess Serological Specificity and Safety of the UBI AD Vaccine

Hyperimmune sera from Groups 3 and 4 baboons immunized with the Aβ peptide immunogen constructs (SEQ ID NOs: 62 and 63) at equimolar ratio described in EXAMPLE 7, were pooled with IgG fraction purified and tested for their reactivity with human AD brain. As shown in FIG. 8, staining with both cerebral vessels and amyloid plaques was found by purified IgG from hyper immune sera but not from similar IgG fractions from the preimmune sera. Preincubation of the immune sera with Aβ₁₋₁₄ peptide absorbed out all immunoreactivity with both cerebral vessels and amyloid plaques, but not by a non-relevant peptide, demonstrating the high specificity of the anti-Aβ antibody reactivity in the immune sera by vaccination with a vaccine formulation comprising Aβ peptide immunogen constructs (SEQ ID NOs: 62 and 63).

Another immunohistopathology study using preimmune and hyperimmune guinea pig IgG was performed on cryostat sections of adult normal human tissues in order to monitor for specificity and undesirable antibody autoreactivities. The panel of human tissues (N=32) was screened for immunoreactivity with purified anti-Aβ₁₋₁₄ IgG from guinea pigs immunized with the UBI AD immunotherapeutic vaccine and compared to preimmune purified IgG from the same animals. The immunostaining patterns observed on sections of adult normal tissues were reviewed by certified clinical pathologists at PhenoPath Laboratories. Except for weak positive immunoreactivity of some muscle tissues (e.g., endometrium), all adult human tissues tested were negative other than strong positive reactivity on senile plaques in one of three adult cerebrum specimens and positive immunostaining of cerebral fluid within spinal cord samples.

Example 11 Immunogenicity Studies of the Prototype UBI AD Vaccine Formulations in Adult Baboons

In Part A of the protocol, four adult male baboons were immunized at 0, 3 and 6 weeks with Aβ₁₋₁₄ peptide immunogens (300 μg total peptide per dose) complexed into proprietary immunostimulatory complexes (ISC) and formulated with aluminum mineral salt adjuvants. The ISC/mineral salt formulations resulted in strong anti-Aβ antibody responses in all animals (FIG. 9A). No adverse injection site reactions were noted.

The aims for Part B of the protocol were: (1) to monitor safety and injection site reactogenicity of repeated exposure at the target clinical dose and at a four-fold higher dose, (2) to monitor immunogenicity in a dose escalation study and (3) to evaluate the kinetics of the recall antibody response. These animals were then rested for 72 weeks. In the interim, serum levels of anti-Aβ antibodies had diminished by 10-100-fold. At 78 and 81 weeks post-initial injection (FIG. 9B), four animals were administered vaccines in either 300 μg peptide doses to animal numbers 564 and 565 or 1200 μg doses to animal numbers 556 and 561. The recall responses rapidly restored peak antibody titers in all four baboons. By week 104, antibody titers had begun to decline and the animals were again restored to peak titers by booster doses at week 104. The kinetics of the serum anti-Aβ antibody responses were determined at weeks 0, 2, 5, 6, 8, 10, 78, 81, 84, 88, 92, 96, 100, 104, 107 and 111 by anti-Aβ₁₋₂₈ peptide ELISA. No injection site reactions were noted in animals receiving the 300 μg dose. However, some redness and inflammation were noted at the sites of injection for the baboons receiving the high dose (1200 μg) at week 78 only; this transient reaction was fully resolved within one week. No other adverse events or safety concerns were reported throughout the 2 years that the baboons were evaluated.

Example 12 In Vitro Neurotoxicity Assay for Inhibition of Fibrillogenesis and Protection from Aβ₁₋₄₀-Mediated Toxicity by Anti-Aβ Antibody

The neurotoxicity assays employed rat pheochromocytoma cell line, PC-12, and aged solutions of the Aβ₁₋₄₀ peptide, as previously described by Solomon B, et al. (Proc Natl Acad Sci USA 1997; 94:4109-4112). The peptide solution was characterized for fibrillar formation by Congo Red binding. On days 6 and 9 the solution bound equivalent amounts of the dye as shown by absorbance, A_(540nm). This observation provided evidence for formation of toxic Aβ₁₋₄₀ aggregates; the day 9 preparation was tested for toxicity to PC-12 cells.

PC-12 cells were grown in tissue culture and suspended into assay medium and placed into the wells of a 96-well round bottom tissue culture plates, 5×10³ cells/well in 100 μL. The toxicity of the 37° C.-incubated peptide (i.e., aggregated Aβ₁₋₄₀) and a freshly prepared peptide (i.e., non-aggregated) was tested at 25 and 6.5 μM in duplicates. Controls were PC-12 cells with assay medium only. The plates were incubated for 48 hour at 37° C. in a CO₂ incubator. Toxicity to the cells was determined by the Promega CytoTox 96® Cytotoxicity Assay. Lysis was determined by absorbance, A_(492 nm) and results were presented as the percentage of cytotoxicity compared to 100% lysis.

In Vitro Evaluation of UBI AD Vaccine for Functional Immunogenicity

The neurotoxicity assay using rat pheochromocytoma cell line, PC-12, and aged solutions of the Aβ₁₋₄₀ peptide characterized to be toxic were used to evaluate the functional efficacy of the antibody response to the UBI AD vaccine. Aged Aβ₁₋₄₀ peptide solution was tested for toxicity on PC-12 cells following a one-hour pre-incubation in the presence of guinea pig or baboon anti-Aβ sera from the animal immunization protocols. The anti-Aβ sera were tested at 1:30 and 1:90 dilutions. Final results were presented as percentage inhibition of Aβ₁₋₄₀ fibril aggregation and percentage protection of PC-12 cells from Aβ₁₋₄₀ fibril-mediated cytotoxicity. The preimmune sera from week 0 of both immunization experiments were included as controls. The immune guinea pig sera and baboon sera from weeks 5 and 8, at both the 1:30 and 1:90 dilutions, provided significant inhibition (50 to 70% for guinea pig sera for bleeds collected at both 5 and 8 weeks at both 1:30 and 1:90 dilutions respectively) when compared to the background 5 to 10% inhibition for the preimmune sera at corresponding dilutions; and (75 and 50% for baboon sera for bleeds collected at both 5 and 8 weeks at 1:30 and 1:90 dilutions respectively) when compared to the 15% background inhibition for the preimmune baboon sera in the inhibition of fibrillogenesis assay. Similarly, protection of PC-12 cells from the Aβ₁₋₄₀-mediated toxicity in the range of 60 to 80% was found for these conditions, in comparison to the background results obtained from the preimmune sera from both guinea pigs and baboons. These results establish functional neutralizing activity against toxic Aβ₁₋₄₀ peptide for the antibodies evoked by immunization with UBITh® amyloid-3 peptide immunogens.

Example 13 Effects of UBI AD Vaccine in a Preventative Mode on Brain Morphology and Amyloid-β Peptide (Aβ₁₋₄₂) Concentration in Brain Samples of Young Transgenic Mice Overexpressing hAPP751

We evaluated the effects of UBI AD Vaccine in a preventative mode on brain morphology and amyloid-β peptide (Aβ₁₋₄₂) concentration in brain samples of young transgenic (tg+) mice over-expressing hAPP751 with the Swedish and the London mutations and in their non-transgenic (ntg) littermates (Rockenstein E M, et al., 1995 and 2001).

Young transgenic (tg+) mice were immunized with the UBI AD Vaccine at ˜14 weeks of age in a prevention mode. When brain tissues were immunohistochemically stained with anti-Aβ₁₋₄₂ antibodies for determination of amyloid plaques, the results for these responsive young tg+ mice showed that the plaque load was reduced. When the brain tissues of vaccinated young tg+ mice were biochemically extracted and evaluated for Aβ₁₋₄₂ levels by quantitative assay, results from the young tg+ responder mice indicated a reduction in Aβ deposition. Both of these parameters indicate that reduction of Aβ₁₋₄₂ load is correlated with antibody response to the UBI AD Vaccine.

In addition, the determinations of percent relative microglial cell activation using anti-CD 11b antibody and of T cell infiltration using anti-CD3 antibody revealed no evidence for increased immune cell activation in the brains of the AD vaccine-treated young tg+ animals when compared with the untreated tg+ control animals.

a. Overall Purpose:

To assess the effects of intramuscular vaccinations over a 12 to 16 week period with the UBI AD Immunotherapeutic Vaccine on brain amyloid deposition and brain plaque load, as well as human amyloid-β peptide (Aβ₁₋₄₂) levels in plasma.

The transgenic animals constitutively over-express human amyloid precursor protein (hAPP) with the London (717) and the Swedish (670/671) mutations under the regulatory control of the murine Thy-1 promoter (Rockenstein E M, et al., 1995, and 2001). The Aβ₁₋₄₂ deposition occurs as early as 3 to 4 months of age with the appearance of mature plaques in the frontal cortex and at 5 to 7 months of age, plaque formation extends to the hippocampus, thalamus and cortical projections areas of the olfactory stream in the hAPP751 tg+ mice.

b. Protocol Summary for Prevention Mode

The hAPP751 transgenic (tg+) mice and their non-transgenic (ntg) littermates (14+2 weeks) were selected to evaluate the effects of the UBI AD vaccine on brain Aβ deposition, and brain Aβ plaque load. A total of 33 tg+ mice and 10 ntg mice were separated into 4 groups: tg+ placebo control mice (n=10) were injected with the adjuvant only; tg+ experimental mice (n=13) were injected with the UBI AD vaccine (90 μg per 150 μL dose); untreated tg+ control mice (n=10); and untreated ntg control mice (n=10). A total of three doses were administered at 0, 3, 12 weeks and an additional dose was administered at week 16. At week 25.5, all mice were monitored for spatial learning by the Morris water maze test. The mice were followed for an additional 4 weeks and then sacrificed.

c. Determination of Anti-Aβ₁₋₂₈ Antibody Titer

All tg+ and ntg mice were bled at weeks 0, 3, 6, 9, 12, 16, 19, 22, and 29. Serum was separated for determination of anti-Aβ₁₋₂₈ antibody titers using the Aβ₁₋₂₈ ELISA. None of the placebo-treated tg+ mice and untreated tg+ mice had detectable anti-Aβ₁₋₂₈ antibody titers. However, young tg+ mice that received at least two UBI AD vaccine injections had detectable antibody titers.

d. Brain Morphology and Analysis of Amyloid Deposition and Plaque Load

At the end of the in life study, at termination, mice were transcardially perfused with physiological (0.9%) saline, the brains were rapidly removed, hemisected, and prepared for further analysis. The left hemispheres were frozen and later analyzed as described in Section e below. The right hemispheres were immersion fixed in fresh 4% paraformaldehyde in PBS, pH 7.4 for one hour. The hemispheres were then transferred to a 15% sucrose solution for cryoprotection. The next day, brains were frozen on dry ice and stored at −80° C. until used for histological investigations. Cryostat sections (10 nm thickness) were stained with H&E, recorded and assessed for neuronal layer integrity and gross morphology. Cryocut tissue sections were evaluated using monoclonal antibody 4G8 (anti-Aβ₁₇₋₂₄) to determine Aβ deposition and plaque load in the cortex and hippocampus. The number of plaques and area covered by plaques were quantified and the mean value of nine tissue slices from 5 different layers across the sagittal brain of each animal built the statistically relevant value for an animal. Seven tg+ mice in the UBI AD vaccine treated group and seven tg+ mice in the untreated control group were evaluated. The results are expressed as the percent Aβ₁₋₂₈ plaque load of UBI AD vaccine treated (n=7) versus untreated (n=7) animals (FIGS. 10A, 10B) and represent the average relative plaque load detected in 9 tissue sections by immunohistochemistry. A comparison of the UBI AD vaccine responder tg+ mice versus the untreated animals are also included in the brain cortex (0.22% vs. 0.32%) and in the hippocampus (0.20% vs. 0.29%); reduced mean plaque load is noted in the highly responsive vaccine-treated animals.

e. Determination of Aβ₁₋₄₂ by Biochemical Fractionation of Brain Tissue

The animals were terminated and the brains were prepared as described in the section below. The left brain hemisphere was frozen separately and later the soluble fractions from four brain extractions were evaluated for Aβ₁₋₄₂ peptide levels using high sensitivity Aβ₁₋₄₂ ELISA kits for antigen detection manufactured by The GENETICS Company, Switzerland; the Aβ₁₋₄₂ levels were determined in comparison to the standard provided by the manufacturer. The results obtained in the four brain fractions are given as ng/g wet brain. The left-brain hemisphere (including the bulbus olfactorius) of each animal was extracted with TRIS-buffered saline (TB S), Triton X-100 detergent, SDS detergent, and formic acid (FA) for characterization and evaluation of Aβ₁₋₄₂ and the fractions were tested in duplicate. Briefly, the TBS extract contains the water-soluble Aβ₁₋₄₀ and Aβ₁₋₄₂ fraction of the brain tissue. To dissolve the remaining beta amyloid peptides, detergents and acids are necessary. Triton X-100 is an oligo-ethylene glycol derivative with two properties; the iso-octyl residue with the benzene ring destroys the apolaric van der Waal forces and the repeated —O—CH₂—CH₂— residues disintegrate hydrogen bonds. SDS has a similar two-sided effect but it is stronger and disrupts the entire secondary structure; the Aβ peptide will get linear and the peptide chain is stretched. Formic acid is the strongest solvent and disrupts mainly hydrogen bonds. It can be assumed that TBS solubilizes oligomeric structures. Triton solubilizes smaller polymers, like protofibrils. SDS disrupts the whole remaining structures and the remaining proportion comprising strongly complexed insoluble fibrils can be separated in FA, mainly as monomers. Therefore, to assess the beta amyloid polymerization status and the efficacy of an anti-amyloidogenic test compound all four fractions are investigated.

The Aβ quantitative ELISA and the biochemical extractions test whether or not the anti-Aβ antibody response of the vaccine-treated (UBI AD vaccine) responder tg+ mice is associated with a reduced Aβ load when compared to the untreated tg+ mice. Of particular note is the reduced overall levels of Aβ₁₋₄₂ in the UBI AD vaccine responder tg+ mice when the Aβ₁₋₄₂ levels in each of the four biochemical extractions of brain tissue are compared to the results from the untreated tg+ control animals (FIGS. 11A, 11B).

f. Determination of Microglial Cell Activation

Cryocut tissue sections were evaluated for activated microglial cells using the CD11b antibody; the mean object size was evaluated as a quotient of the area through the number of objects in each slice as a mean measure of clustering of microglial cells; the mean value of 9 slices from 5 different layers across the sagittal brain of each animal built the statistically relevant value for an animal.

The results of vaccine-treated tg+ mice (n=7) versus non-treated tg+ mice (n=7), expressed as the percent of CD11b-positive cell areas stained in the brain cortex and hippocampus, showed that the treated animals have lower average percent areas stained when compared to the non-treated tg+ control animals. These results indicate that the vaccine-treated animals do not show increased numbers of activated microglial cells when compared with the untreated transgenic mice.

g. Determination of T-Cell-Infiltration in Brain Tissue

Cryocut tissue sections were evaluated to detect the number of T-cells in brain cortex, hippocampus and within blood vessels and cells were exclusively counted. The mean value of nine tissue slices from 5 different layers across the sagittal brain of each animal build the statistically relevant value for an animal. The results of vaccine-treated tg+ mice (n=7) versus non-treated tg+ control mice (n=7), expressed as the number of CD3-positive T-cells stained in brain cortex and hippocampus and the number of T-cells stained within blood vessels, indicate that the vaccine-treated animals show a slight decrease in the mean number of immunostained T-cells counted in the brain cortex, hippocampus and blood vessels when compared to the untreated tg+ control animals.

h. Conclusions

The hAPP751 transgenic mice were injected 3 or 4 times by intramuscular route over a 16 week period with the UBI AD vaccine or a placebo vaccine. The animals had good overall tolerability to the UBI AD vaccine, especially considering the high concentration of the UBI Aβ₁₋₁₄ peptide immunogen constructs given per dose (90 μg/150 μL) to these animals. In the responders, reduced Aβ plaque load and reduced Aβ₁₋₄₂ levels were noted in the 4 brain tissue extractions from these animals. The reduced Aβ deposition and plaques were also shown by immunohistochemistry. There was no evidence of microglial cell activation or T-cell infiltration in the brains of vaccine-treated tg+hAPP751 mice.

Example 14 Epitope Mapping of Antibody Response to UBI AD Vaccine for Safety

ELISA tests using plates coated with Aβ₁₋₁₄ (SEQ ID NO: 4), Aβ₁₋₂₈ (SEQ ID NO: 3), Aβ₁₇₋₄₂ (SEQ ID NO: 67), MvF5 Th (SEQ ID NO: 46), HBsAg3 Th (SEQ ID NO: 47) peptides as the solid-phase antigens were evaluated for the specificity of the antibody response to the UBI AD vaccine in the sera from the immunized guinea pigs and baboons. High titer anti-A3 antibodies evoked by the vaccine were detected with the Aβ₁₋₁₄ and Aβ₁₋₂₈ antigens (Table 1); however, there was concern that the Aβ₁₋₂₈ peptide was also detecting additional antibodies due to “B cell epitope spreading” beyond amino acid 14, a source of potentially adverse cross-reactivities.

To address this concern, hyperimmune guinea pig antisera and hyperimmune baboon antisera were also tested with Aβ₁₇₋₄₂ peptide by ELISA. The ELISA titers indicate that epitope spreading was not detected in the hyperimmune samples tested. The hyperimmune sera showed enhanced binding to the Aβ₁₋₂₈ peptide but did not react with Aβ₁₇₋₄₂. The hyperimmune sera did not react with either MvF5 Th (SEQ ID NO: 46) or HBsAg3 Th (SEQ ID NO: 47) peptide domains. In a fine epitope mapping method to localize the predominant antibody binding site(s) to specific residues within the target region, 24 overlapping 10-mer peptides were synthesized around the N-terminal aspartic acid residue “D” of the Aβ₁₋₁₄ peptide sequence and the adjacent region of the human amyloid-β peptide precursor protein (hAPP), to cover the entire length of Aβ₁₋₁₄ plus adjoining hAPP positions (Table 9). These nested peptides were used individually to coat microtiter wells as solid-phase immunoadsorbents for ELISA tests. The positive control ELISA plate was coated with Aβ₁₋₂₈. They were tested for antibody binding with the sera from the four immunized baboons, from weeks 0, 10, 84 and 111. Baboon sera were serially diluted and assayed on plates coated with a 10-mer peptide at 5 ug/mL. As expected, peptide (DAEFRHDSGY) with SEQ ID NO: 6 representing the N-terminus 10-mer of Aβ₁₋₁₄ (SEQ ID NO: 4) reacted strongly with immune sera from all four baboons. The “D” in position 1 of Aβ₁₋₁₄ was key to the antibody specificity. Deletion of “D” or modification of position 1 to “E” (glutamic acid) resulted in severely reduced binding to the 10-mer peptides, indicating the high specificity of the baboon antibodies for Aβ₁₋₁₀ (SEQ ID NO: 6) and the low likelihood for the occurrence of antibody recognition sites cross-reactive to the Aβ peptide immunogen constructs elsewhere on Aβ₁₋₄₂ peptide or its precursor. In addition, epitope mapping for fine specificity recognized by the immune sera was further confirmed by competitive inhibition ELISA as shown in Table 10. In sum, these antibody epitope findings demonstrated that the antibodies induced by the UBI AD immunotherapeutic vaccine candidate were directed specifically to the N-terminal domain of Aβ, not to sites beyond residue 14 and not to the MvF5 Th nor HBsAg 3 Th domains.

Example 15 Antibody Response and Aβ1-40 Levels in Serum and CSF from Cynomolgus Macaques Received Multiple Immunizations with UBI AD Vaccine

The kinetics of the vaccine response showed that four of six macaques in the low dose Group 2 (150 μg per 0.25 mL) and all six macaques in the high dose Group 3 (750 μg per 1.25 mL) generated antibody against the Aβ₁₋₁₄ peptide immunogen constructs cross-reactive with Aβ₁₋₄₂ after the first immunization.

As shown in Table 11, both low dose and high dose animals sustained high titer antibody for the duration of the study (through week 27). The fine specificity of the antibody response through epitope mapping (Table 12) with sera from four macaques per group, immunized three times (9 WPI) and five times (15 WPI) with either high (750 μg) or low (150 μg) doses of the UBI AD vaccine indicated a strong specificity for N-terminal Aβ₁₋₁₀ peptide (DAEFRHDSGY) (SEQ ID NO: 6) in all four animals per group, similar to that observed with immune sera from the earlier baboon study (Table 9). Unlike the reactivity pattern observed in baboons, some modest reactivities were observed with all four animals for peptides with SEQ ID NOs: 20 to 22 surrounding residues RHD at positions 4, 5 and 6 of the N-terminus of the Aβ₁₋₄₂ peptide. No additional reactivities to other 10-mer peptides outside the four mentioned above are noted for any of the macaque samples tested.

The effects of UBI AD vaccine on Aβ₁₋₄₀ levels in sera and CSF were determined using commercially available immunoassay kits. As shown in Table 13, the concentration of Aβ₁₋₄₀ after vaccination was determined in serum at 0, 15, 21 and 25.5 weeks and in CSF at the time of sacrifice (week 15+1 day or week 27). The Aβ₁₋₄₀ levels in serum were elevated in macaques receiving the UBI AD vaccine but normal levels were noted in animals receiving the placebo vaccine. In contrast, Aβ₁₋₄₀ levels maintained a steady state in the cerebral spinal fluid (CSF) of macaques receiving either the placebo or UBIAD vaccine. These results support the “Peripheral Sink Hypothesis” as the action mode for anti-Aβ antibodies whereby the antibodies promote the efflux of Aβ peptides from the brain to the peripheral circulatory system.

Example 16 Cellular Immune Response from Cynomolgus Macaques Received Multiple Immunizations with UBI AD Vaccine

Peripheral blood mononuclear cell (PBMC) samples were isolated from whole blood collected at 15, 21 and 25.5 weeks and then cultured in the presence of various Aβ peptides. As shown in Table 14, no proliferation responses by lymphocytes were observed when Aβ₁₋₁₄ peptide was added to culture medium. However, positive proliferation responses were noted when the Aβ₁₋₄₂ or Aβ₁₇₋₄₂ (SEQ ID NO: 67) peptide was added to some PBMC cultures.

The PBMC samples collected at 15, 21 and 25.5 weeks were also tested for cytokine secretion in the presence of Aβ peptides or PHA mitogen. As shown in Table 15, three cytokines (IL-2, IL-6, TNF-α) showed detectable secretion in response to the full-length Aβ₁₋₄₂ peptide but not to the Aβ₁₋₁₄ peptide; up-regulation of cytokine secretion was not detected in the UBI AD vaccine-treated samples when compared to the placebo vaccine samples. Three other cytokines (IL-10, IL-13, IFN-γ) tested in the presence of the Aβ peptides were below the assay detection limit in all PBMC cultures.

The macaques were immunized with the UBI AD vaccine having only the N-terminal Aβ₁₋₁₄ peptide immunogens with foreign T helper epitopes, without the Aβ₁₇₋₄₂ peptide domain, indicating that the positive proliferation results noted in the PBMC cultures in the presence of Aβ₁₋₄₂ peptide were not related to the UBI AD vaccine response, but rather were a background response to native Aβ.

These results support the safety of the UBI AD vaccine that has only Aβ₁₋₁₄ and foreign T helper epitopes, showing that it does not generate potentially inflammatory anti-self cell-mediated immune responses to Aβ peptides in the normal macaques. In contrast, the adverse events associated with encephalitis in the clinical trial studies of the AN-1792 vaccine were attributed in part, to the inclusion of T cell epitopes within the fibrillar/aggregated Aβ₁₋₄₂ immunogen of that vaccine.

Example 17 Comparison of Immunogencity of UBI AD Vaccine at Different Levels in Guinea Pigs, Macaques and Baboons

After extensive testing of the various Aβ peptide immunogen constructs for their suitability as key ingredients of the AD vaccine, peptide constructs with SEQ ID NOs: 64 and 65 were selected to devise and design vaccine formulations. The selected vaccine formulation comprising the two peptide immunogen constructs forming immunostimulatory complexes with CpG oligomers and supplemented with mineral salts of Adjuphos (UBI AD vaccine), was tested extensively as described in Examples 8 to 15 to calibrate its immunogenicity in multiple species (guinea pigs, macaques, and baboons) and dosing regimes in preparation for its use in clinical trials. Table 16 summarizes the peptide dose vs responder rate (number of animals with positive titers/total number of animals tested) after one or two doses, and body weight of each species for assessment of the dosing schedules of the UBI AD vaccine. From the analysis, it is preferably to set the per dose level at higher than 100 μg, based on data from all species concerned, to arrive at a respectable response rate after single shot which, upon boost, would allow high or near full response rate. The 300 μg per 0.5 mL dose of UBI AD vaccine was selected for studies in human subjects. In the Phase I clinical studies, individuals were immunized at 0, 4, 12 weeks. Four weeks post one dose, 2 of 19 enrolled subjects had positive anti-Aβ antibody titers; four weeks post two doses at 8 weeks, 17 of 19 subjects were positive; and four week post three doses at 16 weeks, all 19 subjects were positive and remained positive to the end of the Phase I study at weeks 24-26.

Example 18 Phase I Clinical Trial Suggests Therapeutic Effect by UBI AD Vaccine (UB-311)

The Aβ peptide is a major therapeutic target in AD based on pathological, biochemical and genetic evidence that supports its role in the disease process. The goal for an active Aβ immunotherapy, such as UBI AD vaccine (UB-311), is to stimulate an immune response to generate robust anti-Aβ antibodies that captures excess Aβ peptides from circulation and prevents or slows cognitive decline.

The UB-311 phase I clinical trial entitled “A Phase I, Open-label Study to Evaluate the Safety, Tolerability and Immunogenicity of the UBI AD Immunotherapeutic Vaccine (UB-311) in Patients with Mild to Moderate Alzheimer's Disease” was conducted based on the approved final clinical protocol. A total of 19 patients with mild to moderate AD were enrolled. Each patient received three intramuscular injections of the study drug (UB-311) at weeks 0, 4 and 12. The total study duration was 24-26 weeks.

In addition to the evaluation of safety, tolerability, immunogenicity and efficacy data collected from the UB-311 phase I clinical trial, research analyses of antibody binding epitope, Aβ peptide levels, and immune functions of the study subjects for exploratory purposes are described. The results from blood collected before and after UB-311 immunization at weeks 0, 4, 8, 12, 16, and 24/26 for isolation of Peripheral Blood Mononuclear Cells (PBMC) and serum/plasma samples for serological and immunogenicity analyses include (1) anti-Aβ antibody titers, (2) epitope mapping, (3) plasma Aβ₁₋₄₀ levels, and (4) in vitro lymphocyte proliferation and cytokine analysis.

A total of 19 subjects with mild to moderate Alzheimer's disease (AD) were enrolled in the study and received three intramuscular injections of the UBI AD Immunotherapeutic Vaccine (UB-311) at weeks 0, 4 and 12.

UB-311 demonstrated satisfying safety and tolerability profiles when administered to patients with clinically documented mild to moderate AD. The incidence of adverse events (AEs), which were definitely, probably or possibly related to UB-311, was designed as a primary endpoint for evaluating the safety of UB-311 treatment. During the study period, 16 treatment-related AE episodes were reported in 9 of 19 subjects. Among treatment-related AEs were mild injection site reactions (5 subjects), moderate agitation (2 subjects), and mild red blood cell sedimentation rate increase (2 subjects). All treatment-related AEs were rated as grade 1 (mild) or 2 (moderate) in severity and no action was taken for these episodes. One subject with a medical history of ankylosing spondylitis and diabetes mellitus reported a serious adverse event (SAE) of herpes zoster during the follow-up period. The subject was immediately hospitalized at the occurrence of the event and appropriate treatments were provided. The SAE was judged as unlikely in causality and the subject was discharged from hospital two weeks later due to his improved condition.

The tolerability of UB-311 was assessed. All 19 subjects completed the treatment and none withdrew early from the study despite AE occurrences. The tolerability was thus 100%.

Example 19 Administration of UB-311 Vaccine Elicited Antibodies with Specificity to N-Terminus of Aβ₁₋₁₄ Domain in all Subjects

As shown in FIG. 12, the change in anti-Aβ₁₋₁₄ antibody levels was measured at weeks 0, 4, 8, 12, 16 and 24-26 to evaluate the immunogenicity of UB-311 vaccine. The mean value of anti-Aβ₁₋₁₄ antibody levels transformed to log₁₀ for all subjects at week 0 (pre-treatment) was 1.14, slightly increased to 1.21 at week 4, increased markedly to 2.00 and 1.91 at weeks 8 and 12, peaked at 2.70 at week 16 (4 weeks post third immunization), and decreased to 2.28 at weeks 24-26.

The antibody titers were Log₁₀ transformed and their values at week 0 were used as the baseline. A comparable trend was observed for all three specific antibody titers. The mean value of change of antibody titers slightly increased at week 4, except for anti-Aβ₁₋₄₂ monomer antibodies, at the time when the subjects had already received the first dose of UB-311 at week 0, but prior to the second dose. The antibody titers also increased at week 8 after the second dose was given to subjects at week 4. After administration of the third dose at week 12, the peak mean change of antibody titers was detected at week 16.

Example 20 Neurological, Cognitive and Functional Tests Assess Efficacy of UB-311 Vaccine in Mild to Moderate Alzheimer's Disease

The efficacy of UB-311 was evaluated through measuring the changes of ADAS-Cog score, MMSE score, and ADCS-CGIC in 19 patients. The ADAS-Cog score and ADCS-CGIC were assessed at week 0 (V2), week 16 (V7) and weeks 24-26. The MMSE score was measured at prescreen (V1), week 16 and weeks 24-26. Among the subjects, increases of 1.42 and 0.79 in ADAS-Cog score were observed from week 0 to week 16 and from week 16 to weeks 24-26, respectively. The mean ADAS-Cog score at baseline was 26.26 among the subjects, increased to 27.68 at week 16 and slightly increased to 28.47 at weeks 24-26. Furthermore, reductions of 0.32 and 0.79 in MMSE score were found from prescreen visit to week 16 and from week 16 to weeks 24-26 (FIG. 13).

The mean MMSE score of the subjects at prescreen visit was 19.16. The score decreased to 18.84 at week 16, and to 18.05 at weeks 24-26 the last visit. Notably, despite the mean scores of the two scales altered, the distribution of the scores for individual subjects was quite dispersed, and therefore the trends of the two scales seemed to be stable.

As to the ADCS-CGOC rating, more than 35% of subjects demonstrated improvements at week 16, 4 weeks after the last treatment (third dose). These improvement rates decreased to no more than 18% in the patient population after a longer cessation of treatment at weeks 24-26. At week 16, slightly less than half of the subjects had no change in ADCS-CGIC, and this category of subjects increased mildly to more than 50% of the total subjects after another 8 to 10 weeks no-treatment follow-up period after week 16. Comparing subject proportion with improvement versus worsening, positive results were shown at week 16 in favor of the investigational product, but not at week 24-26 (12 weeks after last vaccine dose).

In the subgroup analyses, results demonstrated that older subjects with mild AD (aged >60 years and baseline MMSE >20) had a better response to the UB-311 vaccine by showing (1) a decrease of 3 points in mean ADAS-Cog (compared to an increase of 3.81 points in the placebo group from Tarenflurbil Phase II trial over a 12-month period), (2) a stable average MMSE score (compared to a decrease of 2.04 points in the placebo group from Tarenflurbil Phase II trial over a 12-month period), as shown in FIG. 14, and (3) a higher proportion with improvement and no rate change in ADCS-CGIC. Such improvement in three out of three cognition scores in patients with mild AD with age >60 years has never been reported and is most enthusiastically received.

Example 21 Enzyme Immunoassay (ELISA) for Detection of Human Antibodies to Aβ₁₋₂₈ Monomers, Aβ₁₋₄₂ Monomers or Aβ₁₋₄₂ Oligomers

Study of Alzheimer's disease has demonstrated that Aβ aggregates and Aβ-derived oligomers play a central role in AD pathogenesis. Binding of Aβ oligomers to neurons expressing the N-methyl-D-aspartate (NMDA)-type glutamate receptor (NMDA-R) subunits NR1 and NR2B has been reported by Lacor P N in Current Genomics 2007; 8:486-508. When Aβ oligomers bind to NR1 and NR2B on hippocampal neuronal cells, this ligand-receptor binding results in significant decrease in the number of synaptic terminals, which is associated with memory and cognitive deficits and dementia. Recently, results of in vitro study in cells and clinical trials indicated that anti-Aβ oligomer antibodies are able to block this binding and protect neurons from Aβ oligomer toxicity. UBI AD vaccine (UB-311) contains two peptide immunogens each peptide includes a short N-terminal Aβ peptide (Aβ₁₋₁₄) synthetically linked to a different Th2-biased N-terminal peptide epitope. To evaluate the immunogenicity of the UBI AD vaccine response, an anti-Aβ antibody enzyme immunoassay (ELISA) test was developed for in vitro detection of antibodies to Aβ₁₋₂₈ monomers, Aβ₁₋₄₂ monomers and Aβ₁₋₄₂ oligomers.

The Aβ₁₋₂₈ monomers, Aβ₁₋₄₂ monomers or Aβ₁₋₄₂ oligomers were pre-coated onto the wells of microplates as immobile antigens. During the course of the assay, the serum sample was 1:10 serially diluted from 1:100 to 1:100,000 and added to the pre-coated microplates. The anti-Aβ₁₋₂₈, anti-Aβ₁₋₄₂ monomer or oligomer antibodies, if present, bind to the immobile antigens. After washing the wells to remove unbound antibodies and other serum components, a standardized preparation of horseradish peroxidase-conjugated recombinant protein A/G was added to each well and allowed to react with bound antibodies. The unbound conjugate was removed by washing the wells and a substrate solution containing 3,3′,5,5′-tetramethylbenzidine (TMB) and hydrogen peroxide was added to each well. A yellow color developed in proportion to the amount of Aβ-specific antibodies present, if any, in the serum samples tested. The enzyme-substrate reaction was terminated by the addition of a diluted sulfuric acid solution. The color changes that occur in each well were then determined by spectrophotometric measurement of Absorbance in a microplate reader at a wavelength of 450 nm (A₄₅₀). UBI® ELISA Titer calculation program was used to calculate the relative antibody titer.

Aβ oligomers are shown to be most toxic to neurons compared to Aβ monomers or amyloid plaques. The goal for active immunotherapy is not only to induce production of antibodies specific for Aβ monomers but also for Aβ oligomers. Serum samples collected from 19 patients with mild to moderate AD at weeks 0 (baseline), 4, and 12 before each UB 311 injection and at weeks 8, 16 and 24 were analyzed for anti-Aβ antibody titers. FIG. 15 depicts the antibody titers of anti-Aβ₁₋₂₈ monomer, anti-Aβ₁₋₄₂ monomer and anti-Aβ₁₋₄₂ oligomer at screening visit (V1/V2) and at week 16 (V7), four weeks after the last UB-311 immunization for each of the 19 enrolled subjects.

Example 22 Epitope Mapping: Competitive Binding Inhibition Enzyme Immunoassay (EIA) for Detection of Human Antibodies to the N-Terminal Peptide

Epitope mapping was used to identify the binding sites or epitopes of anti-Aβ₁₋₁₄ antibodies on linear, overlapping 10-mer amino acid sequences of Aβ peptide (between residues −9 and 24 on Aβ) by ELISA tests. Clinical serum samples from the 19 subjects were evaluated. Results at week 16, after 3 immunizations at 0, 4 and 12 weeks, are shown below (FIG. 16).

Synthetic Aβ₁₋₂₈ peptide was chosen as an immobile antigen and pre-coated at the concentration of 2 μg/mL onto the wells of microplates. Before the experiment, each serum sample was diluted at 1:50, 1:100, 1:200 and 1:400 and tested to determine the optimal dilution. The optimally diluted anti-Aβ serum samples were mixed with designed 10-mer peptides individually as a liquid phase immunosorbent. The mixture was diluted 1:5 serially with optimal diluted serum prior to transfer to an Aβ₁₋₂₈ pre-coated plate. The optimally diluted anti-Aβ serum alone was used as a control. During the course of the assay, 10-mer peptides specifically bound to predominant antibody binding site, and competitively inhibited the binding of anti-Aβ antibody and the immobile antigen. After washing the wells to remove unbound antibodies and other serum components, a standardized preparation of horseradish peroxidase-conjugated recombinant protein A/G was added to each well and allowed to react with bound antibodies. After washing the wells to remove unbound conjugate, a substrate solution containing hydrogen peroxide and 3,3′,5,5′-tetramethylbenzidine (TMB) was added to each well. A yellow color developed in proportion to the amount of Aβ-specific antibodies present, if any, in the serum samples tested. The enzyme-substrate reaction was terminated by the addition of a diluted sulfuric acid solution. The color changes that occur in each well were then measured spectrophotometrically in a microplate reader at the wavelength of 450 nm (A₄₅₀) by using IC₅₀ 5× program (Molecular devices). The binding of anti-Aβ antibodies and the immobile antigen in control well represented the maximal binding (100%) and the half maximal inhibitory concentration (IC₅₀) of 10-mer peptide was used as an indication of epitope specificity.

Example 23 Predominant Epitope Recognized by Antibodies in Serum Samples from UB-311 Immunized Patients was Specific to the Aβ₁₋₁₀ Peptide

In a fine epitope mapping method to localize the predominant antibody binding sites to specific residues within the target region (Table 17), 24 overlapping 10-mer peptides (SEQ ID NOs: 6, 8 to 30) were synthesized along the Aβ₁₋₁₄ peptide sequence (SEQ ID No 4) and the adjacent region of the human amyloid-β precursor protein (hAPP), to cover the entire length of Aβ₁₋₁₄ starting at N-terminal aspartic acid residue “D” plus the adjoining hAPP positions (FIG. 16). The serum samples collected from the 19 subjects were tested before immunization and at week 16 after receiving three doses of UB-311. The pretreatment samples were at baseline anti-Aβ antibody levels (data not shown). As expected, the predominant antibody response in all of the 19 samples for which positive epitope maps were generated was directed to the free amino terminus of Aβ (SEQ ID No 6), as shown in FIG. 16 and Table 17. More specifically, peptide DAEFRHDSGY, representing the N-terminus 10-mer of Aβ₁₋₁₄, reacted most strongly with immunized sera from all 19 patients. Additional antibody responses with weak reactivity to other Aβ 10-mer peptides were detected in 8 of the 19 subjects. The serum samples collected at weeks 4, 8, 12 and 24-26 from some but not all subjects were also tested and showed consistent results (data not shown). In summary, these data demonstrate that the majority of antibodies induced by UB-311 were directed specifically to the N-terminal domain of Aβ, and not to the sites beyond residue 14.

Example 24 Aβ₁₋₄₀ Peptide Elevated in Plasma after Three Immunizations of UBI AD Vaccine (UB-311)

At present, the change in plasma concentration of Aβ₁₋₄₀ (SEQ ID NO: 2), Aβ₁₋₄₂ (SEQ ID No: 1), or the Aβ₁₋₄₂: Aβ₁₋₄₀ ratio has not been found significantly associated with treatment response either in the setting of clinical trials of disease-modifying treatments or in patients with AD treated with cholinesterase inhibitors. Nevertheless, plasma Aβ levels have been proposed as a possible biomarker of AD.

In our previous study, the Aβ₁₋₄₀ levels in serum were elevated in macaques receiving the UBI AD vaccine but normal levels were noted in animals receiving the placebo vaccine. These results indicated that the “Peripheral Sink Hypothesis” might be the action mode for anti-Aβ antibodies. This phenomenon was also observed in the present study although the anti-Aβ antibody titers were much higher in the macaques after six UB-311 immunizations than the antibody titers in human subjects after three immunizations. As shown in Table 18, the plasma Aβ₁₋₄₀ levels of 12 paired cases with Aβ₁₋₄₀ plasma samples tested before UB-311 treatment and at week 16 (four weeks after the third immunization) were compared to the serum Aβ₁₋₂₈ antibody concentrations at week 16. All antibody titers were negative before UB-311 immunization. Eight individuals with anti-Aβ₁₋₂₈ antibody titers above log₁₀ 2.4 had elevated Aβ₁₋₄₀ titers after receiving the UBI AD Vaccine (UB-311); whereas, three of 4 individuals with antibody levels below log₁₀ 2.0 were not elevated post-treatment. The increased Aβ₁₋₄₀ levels were small in most cases, with one exception (Subject P109), which showed an unusually high Aβ₁₋₄₀ level in plasma before immunization and a significantly higher level (1031.9 pg/mL) after immunization. The reason for the very high Aβ₁₋₄₀ remains unclear. None of the subjects had measurable levels of Aβ₁₋₄₂ peptide in the plasma.

Example 25 UB-311 Immunization does not Stimulate Human Lymphocytes (PBMC) in the Presence of Aβ₁₋₁₄ or Aβ₁₋₄₂ Peptides

The advent of new vaccines and the increasing number of highly publicized reports that claim a link between certain immunizations and autoimmune disease have led to the public concern over the risk of immunization. Lymphocyte proliferation and cytokine production in response to antigen stimulation can be used to assess whether the immune system is hyper-activated following a vaccination, and which pathway(s), if any, to be involved. The purpose of the present study was to evaluate the safety of the immunogen (Aβ₁₋₁₄) of UB-311 by measuring the Stimulation Index (SI) of lymphocyte proliferation in the absence or presence of Aβ peptides or PHA mitogen as positive control as well as the cytokine concentration in cultured lymphocytes from patients with AD before and after three UB 311 immunizations at week 16.

Peripheral blood mononuclear cells (PBMC) from patients with AD were isolated by Ficoll-hypaque gradient centrifugation. For peptide-induced proliferation and cytokine production, cells (2.5×10⁵ per well) were cultured in triplicate alone or with individual peptide domains added (at a final concentration of 10 μg/mL), including Aβ₁₋₁₄ (SEQ ID NO: 4), Aβ₁₋₁₆ (SEQ ID NO: not included), Aβ₁₋₂₈ (SEQ ID NO: 3), Aβ₁₇₋₄₂ (SEQ ID NO: not included), Aβ₁₋₄₂ (SEQ ID NO: 1) and a non-relevant 38-mer peptide (p1412). Cultures were incubated at 37° C. with 5% CO₂ for 72 hours, and then 100 μL of supernatant was removed from each well and frozen at −70° C. for cytokine analysis. Ten μL of culture medium containing 0.5 μCi of ³H-thymidine (³H-TdR, Amersham, Cat No. TRK637) was added to each well and incubated for 18 hr, followed by detection of radioisotope incorporation by liquid scintillation counting. The mitogen phytohemagglutinin (PHA) was used as a positive control for lymphocyte proliferation. Cells cultured alone without Aβ peptide or PHA mitogen were used as the negative and positive controls. The stimulation index (SI) was calculated as mean counts per min (cpm) of triplicate experimental cultures with Aβ peptide divided by mean cpm of triplicate negative control cultures; a SI>3.0 was considered a significant proliferation response.

Peripheral blood mononuclear cell samples were isolated from whole blood collected at week 0 (baseline) and week 16 (4 weeks after the third dose) and then cultured in the absence or presence of various Aβ peptides. As shown in Table 19, no significant proliferation response by lymphocytes was observed when Aβ₁₋₁₄, other Aβ peptides or p1412 (a non-relevant control peptide) were added to the culture medium. As expected, positive proliferation responses were noted when PHA mitogen was added to culture medium. The observation of similar responses to PHA before and after UB 311 immunization (p=0.87) suggests no significant alteration in study subjects' immune functions (Table 19).

Example 26 UB-311 Immunization does not Stimulate Human Cytokines in the Presence of Aβ₁₋₁₄ Peptide

Cytokine analyses (IL-2, IL-6, IL-10, TNF-α, IFN-γ) from the PBMC cultures were performed on aliquots of culture medium with cells alone or in the presence of Aβ peptide domains or PHA. Human-specific cytokine sandwich ELISA kits (U-CyTech Biosciences, Utrecht, The Netherlands) were used to determine the concentrations (pg/mL) of individual cytokines following the manufacturer's instructions. The PBMC samples collected at week 0 and week 16 were also tested for cytokine secretion either with cells alone (negative control) or in the presence of Aβ peptides, p1412 (non-relevant peptide) or PHA mitogen (positive control) after being cultured for 3 days. The quantifiable range of the kit is between 5 and 320 pg/mL. Any measured concentration below 5 pg/mL or above 320 pg/mL was indicated as below quantification limit (BQL) or above quantification limit (AQL), respectively. However, for statistical considerations, BQL or AQL was replaced with the lower (5 pg/mL) or upper (320 pg/mL) quantifiable limit, respectively. The mean concentrations of each cytokine at week 0 and week 16 are shown in Table 20. As expected, there were significant increases in cytokine production in the presence of PHA, the positive control, except for IL-2. The production of cytokines in response to the stimulation with Aβ₁₋₁₄, or other Aβ peptides was observed at baseline (week 0) and week 16, but most values appeared similar to the corresponding negative controls (cells alone).

In order to assess the change of cell-mediated immune response after immunization, the change of mean cytokine concentrations from baseline to week 16 was compared with that of the negative controls and examined by paired Wilcoxon signed-rank test. Four cytokines (IFN-γ, IL-6, IL-10, TNF-α) showed notable increase in secretion in response to full-length Aβ₁₋₄₂ peptide; this observation may be due to the conformational epitopes of Aβ₁₋₄₂ aggregates. Up-regulation of cytokine secretion was not detected in Aβ₁₋₁₄ or other Aβ peptides.

Summary: UBI AD vaccine contains two peptide immunogens each with a free N-terminal Aβ₁₋₁₄ peptide synthetically linked to MvF5 Th and HBsAg3 Th epitopes respectively. In vitro lymphocyte proliferation and cytokine analysis were used to evaluate the impact of immunization of UBI AD vaccine on the cellular immune response. No proliferation responses by lymphocytes were observed when the Aβ₁₋₁₄ peptide or any other Aβ peptides was added to culture medium as shown in Table 19. Up-regulation of cytokine secretion by lymphocytes of UBI AD vaccine-immunized patients was not detected upon treatment with the Aβ₁₋₁₄ and other Aβ peptides except for Aβ₁₋₄₂, which elicited appreciable increase of four cytokines (IFN-γ, IL-6, IL-10, TNF-α) after UB 311 immunization at week 16 when compared to week 0 levels before treatment (Table 20). The increase of cytokine release through Th2 type T cell response is more likely unrelated to the UBI AD vaccine response since no up-regulation detected with Aβ₁₋₁₄ alone. The response to Aβ₁₋₄₂ is suspected to be a background response to native A3 that may be related to native T helper epitopes identified on Aβ₁₋₄₂. The lack of IL-2 production in response to PHA was observed, which is consistent with the findings reported by Katial R K, et al. in Clin Diagn Lab Immunol 1998; 5:78-81, under similar experimental conditions with normal human PBMC. In conclusion, these results showed that the UBI AD vaccine did not generate potentially inflammatory anti-self, cell-mediated immune responses in patients with mild to moderate Alzheimer's disease who participated in the phase I clinical trial, thus further demonstrating the safety of the UBI AD Vaccine (UB-311).

TABLE 1 Aβ₁₋₄₂ Peptide and Segments Thereof Employed in Serological Assays SEQ Amino Acid positions ID within Aβ₁₋₄₂ or APP NO: Sequence Aβ₁₋₄₂ or APP 770 (D672-A713)  1 DAEFR HDSGY EVHHQ KLVFF AEDVG SNKGA  IIGLM VGGVV IA Aβ₁₋₄₀ or APP 770 (D672-V711)  2 DAEFR HDSGY EVHHQ KLVFF AEDVG SNKGA  IIGLM VGGVV Aβ₁₋₂₈ or APP 770 (D672-K699)  3 DAEFR HDSGY EVHHQ KLVFF AEDVG SNK A4₁₋₁₄ or APP 770 (D672-H685)  4 DAEFR HDSGY EVHH Aβ₁₋₁₂ or APP 770 (D672-Y683)  5 DAEFR HDSGY EV Aβ₁₋₁₀ or APP 770 (D672-Y681)  6 DAEFR HDSGY Aβ₁₅₋₄₂ or APP 770 (Q686-A711)  7 QKLVF FAEDV GSNKG AIIGL MVGGV VIA Aβ₋₉₋₁ or APP 770 (T663-D672)  8 TEEIS EVKMD Aβ₋₈₋₂ or APP 770 (E664-A673)  9 EEISE VKMDA Aβ₋₇₋₃ or APP 770 (E665-E674) 10 EISEV KMDAE Aβ₋₆₋₄ or APP 770 (I666-F675) 11 ISEVK MDAEF Aβ₋₅₋₅ or APP 770 (S667-R676) 12 SEVKM DAEFR Aβ₋₄₋₆ or APP 770 (E668-H677) 13 EVKMD AEFRH Aβ₋₃₋₇ or APP 770 (V669-D678) 14 VKMDA EFRHD Aβ₋₂₋₈ or APP 770 (K670-S679) 15 KMDAE FRHDS Aβ₋₁₋₉ or APP 770 (M671-R680) 16 MDAEF RHDSG Aβ₁₋₁₀ or APP 770 (D672-Y681)  6 DAEFR HDSGY Aβ₂₋₁₁ or APP 770 (A673-E682) 17 AEFRH DSGYE Aβ₃₋₁₂ or APP 770 (E674-V683) 18 EFRHD SGYEV Aβ₄₋₁₃ or APP 770 (F675-H684) 19 FRHDS GYEVH Aβ₅₋₁₄ or APP 770 (R676-H685) 20 RHDSG YEVHH Aβ₆₋₁₅ or APP 770 (H677-Q686) 21 HDSGY EVHHQ Aβ₇₋₁₆ or APP 770 (D678-K687) 22 DSGYE VHHQK Aβ₈₋₁₇ or APP 770 (S679-L688) 23 SGYEV HHQKL Aβ₉₋₁₈ or APP 770 (G680-V689) 24 GYEVH HQKLV Aβ₁₀₋₁₉ or APP 770 (Y681-F690) 25 YEVHH QKLVF Aβ₁₁₋₂₀ or APP 770 (E682-F691) 26 EVHHQ KLVFF Aβ₁₂₋₂₁ or APP 770 (V683-A692) 27 VHHQK LVFFA Aβ₁₃₋₂₂ or APP 770 (H684-E693) 28 HHQKL VFFAE Aβ₁₄₋₂₃ or APP 770 (H685-D694) 29 HQKLV FFAED Aβ₁₅₋₂₄ or APP 770 (Q686-V695) 30 QKLVF FAEDV Aβ₁₆₋₂₂ or APP 770 (D687-E693) 31 KLVFFAE Spacer A 32 εK-KKK Aβ1-16 or APP 770 (D672-K687) 66 DAEFR HDSGY EVHHQ K Aβ17-42 or APP 770 (L688-A713) 67 LVFF AEDVG SNKGA IIGLM VGGVV IA

TABLE 2 Selected Promiscuous T Helper Epitopes for  Employment in the Design of Aβ₁₋₄₂ Derived Peptide Immunogen Constructs SEQ ID Description NO: Sequence Clostridium   33 KKQYIKANSKFIGITEL tetani1 Th MvF1 Th 34 LSEIKGVIVHRLEGV Bordetella  35 GAYARCPNGTRALTVAELRGNAEL pertussis Th Clostridium   36 WVRDIIDDFTNESSQKT tetani2 Th Diphtheria Th 37 DSETADNLEKTVAALSILPGHGC Plasmodium   38 DHEKKHAKMEKASSVFNVVNS falciparum Th Schistosoma   39 KWFKTNAPNGVDEKHRH mansoni Th Cholera Toxin  40 ALNIWDRFDVFCTLGATTGYLKGNS Th MvF2 Th 41 ISEIKGVIVHKIEGI KKKMvF3 Th 42 KKKISISEIKGVIVHKIEGILF       T  RT   TR  T HBsAg1 Th 43 KKKLFLLTKLLTLPQSLD RRRIKII RII I L IR    VRVV  VV V I V    F FF  FF F V F               F MvF4 Th 44 ISISEIKGVIVHKIETILF    T  RT   TR HBsAg2 Th 45 KKKIITITRIITIPQSLD    FFLL   L  ITTI MvF5 Th 46 ISITEIKGVIVHRIETILF HBsAg3 Th 47 KKKIITITRIITIITTID

TABLE 3 Immunogenicity Enhancement of Aβ₁₋₁₄ peptide by Pathogen Protein derived  Th epitopes including Idealized Artificial Th epitopes for Elicitation  of Specific Antibodies towards the N-terminus of the Aβ₁₋₄₂ peptide in    the Design of Aβ Peptide Immunogen Constructs SEQ ID Description NO: Sequence Aβ₁₋₁₄-εK-Clostridium tetani1 Th 48 DAEFRHDSGYEVHH-εK-KKQYIKANSKFIGITEL Aβ₁₋₁₀-εK-MvF1 Th 49 DAEFRHDSGY-εK-LSEIKGVIVHRLEGV Aβ₁₋₁₂-εK-MvF1 Th 50 DAEFRHDSGYEV-εK-LSEIKGVIVHRLEGV Aβ₁₋₁₄-εK-MvF1 Th 51 DAEFRHDSGYEVHH-εK-LSEIKGVIVHRLEGV Aβ₁₋₁₄-εK-Bordetella pertussis Th 52 DAEFRHDSGYEVHH-εK-GAYARCPNGTRALTVAELRGNAEL Aβ₁₋₁₄-εK-Clostridium tetani2 Th 53 DAEFRHDSGYEVHH-εK-WVRDIIDDFTNESSQKT Aβ₁₋₁₄-εK-Diphtheria Th 54 DAEFRHDSGYEVHH-εK-DSETADNLEKTVAALSILPGHGC Aβ₁₋₁₄-εK-Plasmodium falciparum Th 55 DAEFRHDSGYEVHH-εK-DHEKKHAKMEKASSVENVVNS Aβ₁₋₁₄-εK-Schistosoma mansoni Th 56 DAEFRHDSGYEVHH-εK-KWFKTNAPNGVDEKHRH Aβ₁₋₁₄-εK-Cholera Toxin Th 57 DAEFRHDSGYEVHH-εK-ALNIWDRFDVFCTLGATTGYLKGNS Aβ₁₋₁₄-εK-MvF2 Th 58 DAEFRHDSGYEVHH-εK-ISEIKGVIVHKIEGI Aβ₁₋₁₄-εK-KKKMvF3 Th 59 DAEFRHDSGYEVHH-εK-KKK-ISISEIKGVIVHKIEGILF                         T  RT   TR  T Aβ₁₋₁₄-εK-HBsAg1 Th 60 DAEFRHDSGYEVHH-εK-KKKLFLLTKLLTLPQSLD                  RRRIKII RII I L IR                     VRVV  VV V I V                     F FF  FF F V F                                F (Aβ₁₋₁₄)₄-(εK)₂-εK-MvF1 Th 61 (DAEFRHDSGYEVHH)₄-εK₂-εK-LSEIKGVIVHRLEGV Aβ₁₋₁₄-εK-KKK-MvF4 Th 62 DAEFRHDSGYEVHH-εK-KKK-ISISEIKGVIVHKIETILF                         T  RT   TR Aβ₁₋₁₄-εK-HBsAg2 Th 63 DAEFRHDSGYEVHH-εK-KKK-IITITRIITIPQSLD                      FFLL   L  ITTI Aβ₁₋₁₄-εK-KKK-MvF5 Th 64 DAEFRHDSGYEVHH-εK-KKK-ISITEIKGVIVHRIETILF Aβ₁₋₁₄-εK-HBsAg3 Th 65 DAEFRHDSGYEVHH-εK-KKK-IITITRIITIITTID

TABLE 4 Assessment of Immogenicity in Guinea Pigs upon Prime (0 wpi) and boost (4 wpi) with vaccine formulations comprising various Aβ derived peptide immunogen constructs Description of Aβ derived peptide 0 wpi 4 wpi 6 wpi 8 wpi immunogen construct Aβ₁₋₄₂ ELISA Aβ₁₋₄₂ ELISA β₁₋₄₂ ELISA Aβ₁₋₄₂ ELISA Group in the vaccine SEQ ID Animal ELISA ELISA ELISA ELISA No. formulation NO: ID Log₁₀ Titer Log₁₀ Titer Log₁₀ Titer Log₁₀ Titer 1 Aβ₁₋₄₂ peptide 1 2723 0.438 3.574 3.460 3.744 2724 0.570 2.582 2.684 2.649 2725 0.630 3.232 3.279 2.958 Geomean 0.540 3.101 3.123 3.084 2 Aβ₁₋₂₈ peptide 3 2726 0.330 3.768 3.572 3.369 2727 0.440 3.690 3.688 3.759 2728 0.350 3.683 3.879 3.960 Geomean 0.370 3.713 3.711 3.688 3 Aβ₁₋₁₄ peptide 4 2729 0.620 1.235 1.212 1.241 2730 0.570 1.142 1.113 1.151 2731 0.420 1.211 1.114 1.189 Geomean 0.529 1.195 1.145 1.193 4 Aβ₁₋₁₄-εK-Clostridium 48 2763 0.591 1.736 2.532 2.920 tetani1 Th 2764 0.582 1.943 0.968 1.511 2765 0.514 0.890 1.591 2.435 Geomean 0.561 1.443 1.574 2.207 6 Aβ₁₋₁₀-εK-MVF1 Th 49 2757 0.424 4.124 4.622 4.523 2758 0.649 4.034 4.322 4.372 2759 0.753 4.275 4.555 4.364 Geomean 0.592 4.143 4.498 4.419 7 Aβ₁₋₁₂-εK-MVF1 Th 50 2760 0.342 4.356 4.732 4.534 2761 0.563 4.574 4.352 4.623 2762 0.733 4.356 4.623 4.733 Geomean 0.521 4.427 4.566 4.629 5 Aβ₁₋₁₄-εK-MVF1 Th 51 2766 0.342 4.744 4.854 4.878 2767 0.647 4.500 5.337 4.777 2768 0.182 5.074 4.791 4.601 Geomean 0.343 4.767 4.988 4.751 8 Aβ₁₋₁₄-εK-Bordetella 52 2769 0.648 2.235 3.571 2.686 pertussis Th 2770 0.415 2.284 4.203 3.799 2771 0.488 1.331 2.541 2.202 Geomean 0.508 1.894 3.366 2.822 9 Aβ₁₋₁₄-εK-Clostridium 53 2772 0.714 1.843 2.818 2.761 tetani 2 Th 2773 1.165 3.370 1.297 1.828 2774 0.886 1.398 3.112 3.165 Geomean 0.903 2.055 2.249 2.518 10 Aβ₁₋₁₄-εK-Diphtheria 54 2775 0.314 3.674 4.675 4.358 Th 2776 0.233 0.780 1.587 1.695 2777 0.780 3.629 4.473 3.718 Geomean 0.385 2.183 3.214 3.017 11 Aβ₁₋₁₄-εK-Plasmodium 55 2778 0.868 3.941 3.856 3.382 falciparum Th 2779 0.464 1.926 2.549 2.633 2780 0.627 4.350 3.723 3.218 Geomean 0.632 3.208 3.320 3.060 12 Aβ₁₋₁₄-εK-Schistosoma 56 2781 0.968 0.395 2.475 2.583 mansoni Th 2782 0.754 1.101 2.554 2.692 2783 0.680 1.882 0.881 1.250 Geomean 0.792 0.935 1.773 2.056 13 Aβ₁₋₁₄-εK-Cholera Toxin Th 57 2784 0.836 4.218 4.735 4.287 2785 1.111 4.704 5.357 5.347 2786 0.497 4.252 4.698 4.600 Geomean 0.773 4.386 4.921 4.724 14 Aβ₁₋₁₄-εK-MVF2 Th 58 2787 1.333 5.347 5.398 4.791 2788 0.546 5.495 5.409 4.931 2789 0.705 5.658 5.745 4.822 Geomean 0.801 5.498 5.515 4.848 15 Aβ₁₋₁₄-εK-MVF3 Th 59 2790 0.701 4.943 5.678 5.569 2791 0.360 3.468 5.745 5.658 2792 0.494 4.759 5.319 5.347 Geomean 0.500 4.337 5.577 5.523 16 Aβ₁₋₁₄-εK-HBsAg1 Th 60 2793 0.880 3.199 4.561 4.431 2794 0.911 4.817 4.303 4.788 2795 0.761 4.567 5.328 5.495 Geomean 0.848 4.129 4.711 4.885 17 (Aβ₁₋₁₄)₄-(εK)₂-εK-MVF1 Th 61 2796 0.479 5.041 5.585 4.696 2797 0.973 4.385 4.831 4.751 2798 0.345 3.919 4.698 3.922 Geomean 0.544 4.425 5.023 4.439

TABLE 5 Assessment of Immogenicity in Guinea Pigs upon Prime (0 wpi) and boost (4 wpi) with vaccine formulations comprising two Aβ₁₋₁₄ derived peptide immunogen constructs and combination thereof Description of Aβ₁₋₁₄ peptide immunogen 0 wpi 3 wpi 5 wpi 8 wpi construct Aβ₁₋₄₂ ELISA Aβ₁₋₄₂ ELISA Aβ₁₋₄₂ ELISA Aβ₁₋₄₂ ELISA Group in the vaccine SEQ ID Animal ELISA ELISA ELISA ELISA No. formulation NO: ID Log₁₀ Titer Log₁₀ Titer Log₁₀ Titer Log₁₀ Titer 1 Aβ₁₋₁₄-εK-KKK-MvF4 62 1935 0.587 4.362 4.579 4.447 Th 1936 0.414 3.684 4.543 4.217 1937 0.390 4.393 3.652 4.358 1938 0.179 3.768 3.648 4.283 1939 0.331 3.726 3.673 4.163 1940 0.350 3.732 4.787 3.813 Geomean 0.354 3.932 4.117 4.208 2 Aβ₁₋₁₄-εK- 63 1929 0.288 2.720 3.502 3.596 HBsAg2 Th 1930 0.507 2.817 3.559 3.653 1931 0.721 2.860 3.575 3.696 1932 0.548 2.315 3.776 3.681 1933 0.619 2.322 3.742 3.836 1934 0.234 2.687 3.459 3.744 Geomean 0.450 2.610 3.600 3.700 3 Aβ₁₋₁₄-εK-KKK-MvF4 62 + 63 1923 0.298 4.759 4.880 4.803 Th + 1924 0.554 4.619 4.979 4.702 Aβ₁₋₁₄-εK-HBsAg2 Th 1925 0.299 4.835 4.791 4.955 at equal molar ratio 1926 0.635 4.831 4.710 5.150 1927 0.911 5.097 4.278 4.313 1928 0.890 5.188 4.721 5.206 Geomean 0.542 4.884 4.721 4.845

TABLE 6 Assessment of Antibodies Directed against the Th peptides or Carrier Protein Element of the Immunogens upon Prime (0 wpi) and boost (4 wpi) with Vaccine Formulations comprising two Aβ₁₋₁₄ derived peptide Immunogen Constructs and Combination thereof in Guinea Pigs 8 wpi HBsAg2 Th Description of Aβ₁₋₁₄ Aβ₁₋₄₂ ELISA MvF4 Th ELISA ELISA peptide (SEQ ID NO: 1) (SEQ ID NO: 44) (SEQ ID NO: 45) KLH-ELISA Group construct in the SEQ ID Animal ELISA ELISA ELISA ELISA No. vaccine formulation NO: ID Log₁₀ Titer Log₁₀ Titer Log₁₀ Titer Log₁₀ Titer 1 Aβ₁₋₁₄-εK-KKK-MvF4 62 1935 4.447 0.268 0.288 N/A Th 1936 4.217 0.216 0.504 N/A 1937 4.358 0.196 0.621 N/A 1938 4.283 0.179 0.360 N/A 1939 4.163 0.332 0.519 N/A 1940 3.813 0.286 0.233 N/A Geomean 4.208 0.240 0.397 N/A 2 Aβ₁₋₁₄-εK- 63 1929 3.596 0.575 0.431 N/A HBsAg2 Th 1930 3.653 0.423 0.257 N/A 1931 3.696 0.380 0.345 N/A 1932 3.681 0.279 0.563 N/A 1933 3.836 0.336 0.365 N/A 1934 3.744 0.425 0.354 N/A Geomean 3.700 0.393 0.375 N/A 3 Aβ₁₋₁₄-εK-KKK-MvF4 62 + 63 1923 4.803 0.350 0.631 N/A Th + Aβ₁₋₁₄- 1924 4.702 0.724 0.350 N/A εK-HBsAg2 Th at 1925 4.955 0.324 0.391 N/A equal ratio by weight 1926 5.150 0.394 0.452 N/A 1927 4.313 0.520 0.368 N/A 1928 5.206 0.528 0.364 N/A Geomean 4.845 0.455 0.417 N/A 4 KLH-(C)-Aβ₁₋₁₄  4 1968 3.626 N/A N/A 7.006 1969 3.981 N/A N/A 7.167 1970 2.227 N/A N/A 4.658 1971 3.005 N/A N/A 5.593 1974 2.527 N/A N/A 7.000 1975 2.599 N/A N/A 7.000 Geomean 2.931 N/A N/A 6.326

TABLE 7 Assessment of Immunogenicity in Baboons upon Prime (0 wpi) and Boosts (3 and 6 wpi) with vaccine formulations comprising varying amounts of Aβ₁₋₁₄ derived peptide immunogen constructs (SEQ ID NOs: 62 + 63) in ISA51 w/o Emulsion and in Alum 5 wpi 8 wpi 14 wpi Aβ₁₋₄₂ Aβ₁₋₄₂ 10 wpi Aβ₁₋₄₂ Description of 0 wpi ELISA ELISA Aβ₁₋₄₂ ELISA Group vaccine Animal Aβ₁₋₄₂ ELISA Log₁₀ Log₁₀ ELISA Log₁₀ No. formulation ID Log₁₀ Titer Titer Titer Log₁₀ Titer Titer 1 SEQ ID X798 1.397 2.463 2.985 2.337 1.478 NO: 62 + SEQ ID NO: 63 at equal molar ratio @100 μg in 0.5 mL Alum (alhydrogel) 2 SEQ ID X1498 1.394 3.462 3.236 2.422 1.774 NO: 62 + SEQ ID NO: 63 at equal molar ratio @25 μg in 0.5 mL ISA51 (w/o) emulsion 3 SEQ ID X299 1.140 3.038 3.427 3.345 2.205 NO: 62 + SEQ X1098 1.610 3.987 4.460 4.662 3.666 ID NO: 63 at X398 1.541 3.926 4.353 4.095 2.972 equal molar Geomean 1.414 3.623 4.052 3.997 2.885 ratio @100 μg in 0.5 mL ISA51 (w/o) emulsion 4 SEQ ID X1198 1.696 3.696 5.051 5.115 4.531 NO: 62 + SEQ ID NO: 63 at equal molar ratio @400 μg in 0.5 mL ISA51 (w/o) emulsion

TABLE 8 Assessment of Antibodies (from 8 wpi sera in guinea pigs) Directed against the Th peptides of the Aβ peptide Immunogen constructs upon Prime (0 wpi) and boost (4 wpi) with Vaccine Formulation comprising two Aβ₁₋₁₄ Peptide Immunogen Constructs Description of Aβ₁₋₁₄ 8 wpi peptide Aβ₁₋₄₂ ELISA MvF 5 Th ELISA HBsAg3 Th ELISA construct in SEQ (SEQ ID NO: 1) (SEQ ID NO: 46) (SEQ ID NO: 47) Group the vaccine ID Animal ELISA ELISA ELISA No. formulation No: ID Log₁₀ Titer Log₁₀ Titer Log₁₀ Titer 1 Aβ₁₋₁₄-εK- 64 + 65 2123 4.683 0.210 0.314 KKK-MvF5 2124 3.884 0.325 0.421 Th + 2125 3.923 0.433 0.311 Aβ₁₋₁₄-εK- 2126 3.578 0.542 0.554 HBsAg3 Th 2127 3.348 0.520 0.381 at 2128 3.482 0.403 0.415 equimolar Geomean 3.792 0.387 0.392 ratio

TABLE 9 Epitope Mapping for Fine Specificity Analysis at the N-terminus  of Aβ₁₋₄₂ by sera from vaccinated baboons collected over the period of immunization (from 0 to 111 wpi) Peptide ELISA Titer titers (Log₁₀) SEQ ID Weeks post immunization NO: Peptide Sequence 0 10 84 111  8 TEEISEVKMD 0.23 0.26 0.16 0.15  9 EEISEVKMDA 0.24 0.30 0.21 0.22 10 EISEVKMDAE 0.23 0.25 0.16 0.14 11 ISEVKMDAEF 0.20 0.20 0.15 0.13 12 SEVKMDAEFR 0.21 0.24 0.16 0.13 13 EVKMDAEFRH 0.19 0.23 0.16 0.14 14 VKMDAEFRHD 0.27 0.46 0.48 0.55 15 KMDAEFRHDS 0.26 0.36 0.41 0.51 16 MDAEFRHDSG 0.26 0.32 0.16 0.17  6 DAEFRHDSGY 0.26 3.26 3.65 3.21 17 AEFRHDSGYE 0.25 0.35 0.25 0.19 18 EFRHDSGYEV 0.24 0.30 0.18 0.18 19 FRHDSGYEVH 0.20 0.40 0.22 0.30 20 RHDSGYEVHH 0.23 0.34 0.27 0.41 21 HDSGYEVHHQ 0.21 0.40 0.18 1.14 22 DSGYEVHHQK 0.32 0.78 0.64 0.76 23 SGYEVHHQKL 0.13 0.49 0.51 0.78 24 GYEVHHQKLV 0.13 0.27 0.19 0.12 25 YEVHHQKLVF 0.16 0.43 0.15 0.22 26 EVHHQKLVFF 0.17 0.26 0.13 0.13 27 VHHQKLVFFA 0.16 0.23 0.12 0.11 28 HHQKLVFFAE 0.19 0.22 0.13 0.12 29 HQKLVFFAED 0.18 0.21 0.13 0.13  3 Aβ₁₋₂₈  0.12 3.26 3.57 3.32 DAEFRHDSGYEVHHQKLVFFAEDVGSNK

TABLE 10 Epitope Mapping by Competitive Inhibition ELISA with Hyperimmune Sera from Baboons Peptide Percent (%) Inhibition ELISA after peptide pre-absorption of sera concentration Aβ₁₋₂₈ Aβ₁₋₁₀ Aβ_([−1]-9) Aβ₂₋₁₁ Aβ₃₋₁₂ Aβ17₋₄₃ μg/mL) (SEQ ID NO: 3) (SEQ ID NO: 6) (SEQ ID NO: 16) (SEQ ID NO: 17) (SEQ ID NO: 18) (SEQ ID NO: 67) 32 99 97 39 19 3 7 8 93 93 17 6 0 0 2 72 82 8 0 0 5 1 63 72 4 0 0 10 0.5 50 55 9 0 1 9 0.25 34 37 8 3 1 5 0 0 0 0 0 0 0 50% inhibition of Aβ₁₋₁₀ peptide is about 0.3 μg/mL. Specificity of baboon anti-Aβ antibody predominately targets the N-terminal aspartic acid (D). Epitope Mapping Using 10-mer Aβ Peptides of Human Amyloid Precursor Protein (hAPP) detected by Baboon Immune Serum Samples show Specificity to N-terminus Aβ₁₋₁₀ Peptide.

TABLE 11 Effect of Repeat Doses of UBI AD Vaccine on Antibody Titers (Log₁₀) in Cynomolgus Macaques Group Time (Week) μg/dose 0 3 6 9 12 15 21 After 27 0 0.838 ± 0.410 1.249 ± 0.190 1.169 ± 0.206 1.790 ± 0.408 1.382 ± 0.392 1.199 ± 0.261 1.068 ± 0.142 0.860 ± 0.257 150 1.056 ± 0.186 2.252 ± 0.702 3.507 ± 0.493 3.714 ± 0.461 3.287 ± 0.577 3.905 ± 0.669 3.580 ± 0.315 3.644 ± 1.403 750 0.829 ± 0.185 3.169 ± 0.487 4.217 ± 0.415 4.316 ± 0.416 3.784 ± 0.278 3.977 ± 0.125 4.027 ± 0.222 3.596 ± 0.080 N = 6 macaques per group (weeks 0, 3, 6, 9, 12 and 15); N = 3 macaques per group (weeks 21, 27)

TABLE 12 Specificity Analyses of Antisera Collected at Weeks 9 and 15 from Cynomolgus Macaques Immunized with the Placebo Vaccine (0 μg/dose) or UBI AD Vaccine (150 μg/dose or 750 μg/dose) SEQ ID 0 μg/dose 150 μg/dose 750 μg/dose NO: Sequence 9 WPI 15 WPI 9 WPI 15 WPI 9 WPI 15 WPI 8 TEEISEVKMD 0.065 0.054 0.075 0.084 0.061 0.078 9 EEISEVKMDA 0.061 0.060 0.082 0.092 0.081 0.076 10 EISEVKMDAE 0.053 0.070 0.060 0.056 0.064 0.053 11 ISEVKMDAEF 0.059 0.055 0.055 0.058 0.063 0.062 12 SEVKMDAEFR 0.045 0.047 0.056 0.053 0.054 0.050 13 EVKMDAEFRH 0.047 0.041 0.046 0.047 0.054 0.047 14 VKMDAEFRHD 0.050 0.043 0.068 0.053 0.061 0.054 15 KMDAEFRHDS 0.056 0.055 0.065 0.031 0.069 0.062 16 MDAEFRHDSG 0.049 0.041 0.056 0.061 0.051 0.056 6 DAEFRHDSGY N- terminus 0.051 0.053 0.691 0.725 0.972 1.682 17 AEFRHDSGYE 0.045 0.054 0.058 0.059 0.054 0.060 18 EFRHDSGYEV 0.054 0.046 0.047 0.060 0.042 0.052 19 FRHDSGYEVH 0.051 0.060 0.085 0.076 0.066 0.096 20 RHDSGYEVHH 0.054 0.060 0.296 0.400 0.453 0.461 21 HDSGYEVHHQ 0.059 0.052 0.266 0.494 0.419 0.332 22 DSGYEVHHQK 0.042 0.051 0.270 0.289 0.405 0.197 23 SGYEVHHQKL 0.051 0.048 0.097 0.071 0.077 0.082 24 GYEVHHQKLV 0.042 0.047 0.055 0.067 0.052 0.059 25 YEVHHQKLVF 0.042 0.036 0.092 0.069 0.069 0.058 26 EVHHQKLVFF 0.034 0.034 0.044 0.051 0.042 0.044 27 VHHQKLVFFA 0.037 0.039 0.046 0.082 0.057 0.083 28 HHQKLVFFAE 0.038 0.040 0.044 0.052 0.046 0.032 29 HQKLVFFAED 0.048 0.051 0.050 0.058 0.047 0.050 30 QKLVFFAEDV 0.044 0.047 0.043 0.055 0.062 0.059 3 Aβ₁₋₂₈  NA 0.087 NA 3.107 NA 3.069 DAEFRHDSGYEVHHQKLVFFAEDVGSNK NA = Not available

TABLE 13 Aβ₁₋₄₀ Concentration (pg/mL) from Cynomolgus Macaques Before and After UBI AD Vaccine in Serum (upper panel) and Cerebral Spinal Fluid (lower panel) Aβ₁₋₄₀ Serum Vaccine 21 wpi 26 wpi Dose 0 wpi (n = 6) 15 wpi (n = 6) (n = 3) (n = 3)  0 μg  61.7 ± 12.7  63.0 ± 16.8  63.7 ± 12.2 52.7 ± 2.5 (control) 150 μg 53.9 ± 6.3 127.4 ± 23.8 144.8 ± 17.3 158.0 ± 38.1 750 μg 56.8 ± 7.7 138.2 ± 18.9 144.5 ± 22.5 118.0 ± 20.9 Aβ₁₋₄₀ Cerebral Spinal Fluid Vaccine Dose 15 wpi (n = 3) 28 wpi (n = 3)  0 μg (control) 56.4 ± 6.0 59.7 ± 5.9 150 μg 63.9 ± 6.5 67.6 ± 5.4 750 μg 57.5 ± 5.9 54.3 ± 2.9

TABLE 14 Proliferation Expressed as Stimulation Index by Peripheral  Blood Mononuclear Cells in Cynomolgus Macaque upon  Coculture with Various Aβ peptides Stimulation Index (S.I.) [positive S.I. > 4.0] Peptide Group 1 Placebo Group 2 UBITh ® AD Group 3 UBITh ® AD Domain Vaccine Control Vaccine (Low dose) Vaccine (High dose) Aβ₁₋₁₄ −− (1.5) −− (0.2) −− (1.2) Aβ₁₋₁₆ ++ (12.7) + (7.8) + (7.9) Aβ₁₇₋₄₂ ++++ (83.7) ++++ (46.9) ++++ (56.6) Aβ₁₋₄₂ ++ (16.0) ++ (15.1) ++ (15.5) Aβ₁₋₁₄ (SEQ ID NO: 4) DAEFRHDSGYEVHH Aβ₁₋₁₆ (SEQ ID NO: 66) DAEFRHDSGYEVHHQK Aβ₁₇₋₄₂ (SEQ ID NO: 67) LVFFAEDVGSNKGAIIGLMVGGVVIA Aβ₁₋₄₂ (SEQ ID NO: 1) DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA

TABLE 15 Measurement of Cytokine Concerntration in Cynomolgus Macaque Peripheral Blood Mononuclear Cells (PBMCs) upon Stimulation with Aβ₁₋₁₄, Aβ₁₋₄₂ peptides or PHA (Phytohemagglutin) Mitogen^(a) Cytokine concentration^(b) (pg/mL) Cytokine Vaccine dose Aβ₁₋₁₄ Aβ₁₋₄₂ PHA IL-2 Placebo BDL^(c) 23.3 ± 13.1 90.6 ± 12.4 150 μg BDL 19.4 ± 9.7  96.1 ± 13.3 750 μg BDL 25.2 ± 11.8 97.5 ± 6.6  IL-6 Placebo BDL 23.1 ± 11.7 69.1 ± 12.0 150 μg BDL 15.0 ± 9.1  70.6 ± 15.7 750 μg BDL 23.4 ± 10.5 66.2 ± 7.3  TNF-α Placebo BDL 9.2 ± 5.3 91.0 ± 29.1 150 μg BDL 7.9 ± 4.8 96.1 ± 22.2 750 μg BDL 7.8 ± 5.9 89.0 ± 13.7 ^(a)Peripheral blood mononuclear cells (PBMC) from six Cynomolgus macaques were cultured 24 hour after the last immunization (15 wpi) in the absence or presence of Aβ peptides or PHA mitogen. Culture supernatants were tested for detectable concentrations of each cytokine (IL2, IL6 and TNFα) by commercial ELISA tests (U-CyTech Biosciences, Utrecht, The Netherlands). ^(b)Result was shown as mean ± standard deviation. ^(c)BDL, below detection level.

TABLE 16 Comparison of Immunogenicity of UBI AD vaccine at Difference Dose Levels in Guinea Pigs, Rhesus Macaques and Baboons Antibody titer Log₁₀ >2³ Peptide dose (μg)² 3 weeks post 3 weeks post Species [BW] per animal per kg BW 1 dose 2 doses Guinea pig 1 2.5-3.3  0/3⁴ 0/3 [300-400 3 7.5-10  0/3 0/3 grams] 10 25-33 0/6 5/6 30  75-100 1/6 6/6 100 250-333 2/3 3/3 300  750-1000 2/3 3/3 Macaque 150   30-37.5 4/6 6/6 [4-5 kg] 750   150-187.5 6/6 6/6 Baboon 300-A¹ 20-30 3/4 4/4 [10-15 kg] 300-B¹ 20-30 2/2 2/2 1200  80-120 2/2 2/2 ¹Baboons immunized in Part A at 0 and 3 weeks and in Part B at 78 and 81 weeks (after 72 week rest period). ²Each 1 mL dose consists of 600 μg peptide. ³Log₁₀ values >2 are scored as positive anti-Aβ titers. ⁴Numbers represent number of animals with positive titers/total number of animals tested. BW: body weight;

TABLE 17 Epitope Mapping for Fine Specificity Analysis at the N-terminus of Aβ₁₋₄₂ by Sera (16 wpi) from all vaccinated patients SEQ ID Aβ Subjects NO: Peptide Sequence Position P101 P102 P103 P104 P105 P106 P107 P108 P109 P201  8 TEEISEVKMD −9 to 1     0    0   0    0    0    0    0     0     0    0  9 EEISEVKMDA −8 to 2     0    0   0    0    0    0    0     0     0    0 10 EISEVKMDAE −7 to 3     0    0   0    0    0    0    0     0     0    0 11 ISEVKMDAEF −6 to 4     0    0   0    0    0    0    0     0     0    0 12 SEVKMDAEFR −5 to 5    10    0   0    0    0    0    0     0     0    0 13 EVKMDAEFRH −4 to 6     1    0   0    0    0    0    0     0     0   58 14 VKMDAEFRHD −3 to 7    31    0   0    0    0    0    0     0     0    0 15 KMDAEFRHDS −2 to 8    94    0   0    0    0    0    0     0     0    2 16 MDAEFRHDSG −1 to 9   420   12   0    0    0    0    0     0     0    9  6 DAEFFHDSGY N-terminus  1 to 10  1983 1669  36 1721 3840 5193 2838   948  1675 1034 17 AEFRHDSGYE  2 to 11     2    0   0    0    0    0    0     0     0    3 18 EFRHDSGYEV  3 to 12     0    0   0    0    0    0    0     0     0    0 19 FRHDSGYEVH  4 to 13     0    0   0    0    0    0    0     0     0    0 20 RHDSGYEVHH  5 to 14     0    0   0    0    0    0    0     0     0    0 21 HDSGYEVHHQ  6 to 15     0    0   0    0    0    0    0     0     0    0 22 DSGYEVHHQK  7 to 16   214    0   0    0    0    0    0     0     0    0 23 SGYEVHHQKL  8 to 17     0    0   0    0    0    0    0     0     0    0 24 GYEVHHQKLV  9 to 18     0    0   0    0    0    0    0     0     0    0 25 YEVHHQKLVF 10 to 19     0    0   0    0    0    0    0     0     0    0 26 EVHHQKLVFF 11 to 20     0    0   0    0    0    0    0     0     0    0 27 VHHQKLVFFA 12 to 21     0    0   0    0    0    0    0     0     0    0 28 HHQKLVFFAE 13 to 22     0    0   0    0    0    0    0     0     0    0 29 HQKLVFFAED 14 to 23     0    0   0    0    0    0    0     0     0    0 30 QKLVFFAEDV 15 to 24     0    0   0    0    0    0    0     0     0    0  3 DAEFRHDSGYEVHHQKLVFFAEDVGSNK  1 to 28   685  161 220  295  450  715 1163   478   430  339 SEQ ID Aβ Subjects NO: Peptide Sequence Position P202 P203 P204 P205 P206 P207 P208 P209 P210  8 TEEISEVKMD −9 to 1     0    0   0    0    0    0    0     0     0  9 EEISEVKMDA −8 to 2     0    0   0    0    0    0    0     0     0 10 EISEVKMDAE −7 to 3     0    0   0    0    0    0    0     0     0 11 ISEVKMDAEF −6 to 4     0    0   0    0    0    0    0     0     0 12 SEVKMDAEFR −5 to 5     0    0   0    0    0    0    0     0     0 13 EVKMDAEFRH −4 to 6     0    0   0    0    0    1    0     0     0 14 VKMDAEFRHD −3 to 7     0    0   1    0    0    0    0     0    13 15 KMDAEFRHDS −2 to 8     7    0  12    0    0    0    0     0    52 16 MDAEFRHDSG −1 to 9   116    0  17    0    0    2    6     0   121  6 DAEFFINDSGY N-terminus  1 to 10 42313 1284 274   81 1797 6024 4093 27596 20968 17 AEFRHDSGYE  2 to 11     0    0   0    0    0    0    0     0     0 18 EFRHDSGYEV  3 to 12     0    0   0    0    0    0    0     0     0 19 FRHDSGYEVH  4 to 13     0    0   0    0    0    0    0     0     0 20 RHDSGYEVHH  5 to 14     0    0   0    0    0    0    0     0     0 21 HDSGYEVHHQ  6 to 15     0    0   0    0    0    0    0     0     0 22 DSGYEVHHQK  7 to 16     0    0   0    0    0    0    0     0     0 23 SGYEVHHQKL  8 to 17     0    0   0    0    0    0    0     0     0 24 GYEVHHQKLV  9 to 18     0    0   0    0    0   16    0     0     0 25 YEVHHQKLVF 10 to 19     0    0   0    0    0   10    0     0     0 26 EVHHQKLVFF 11 to 20     0    0   0    0    0    0    0     0     0 27 VHHQKLVFFA 12 to 21     0    0   0    0    0   27    0     0     0 28 HHQKLVFFAE 13 to 22     0    0   0    0    0    0    0     0     0 29 HQKLVFFAED 14 to 23     0    0   0    0    0    0    0     0     0 30 QKLVFFAEDV 15 to 24     0    0   0    0    0    0    0     0     0  3 DAEFRHDSGYEVHHQKLVFFAEDVGSNK  1 to 28   509  279 284   39  226  906 1157   893  1321

TABLE 18 Analysis of Aβ₁₋₄₀ concentrations (pg/mL) in Plasma of AD patients Before and After Immunization with UBI AD Vaccine and Correlation with Anti-Aβ₁₋₂₈ Antibody Titer (Log₁₀) in Decreasing Order Anti-Aβ₁₋₂₈ Aβ₁₋₄₀ Subject ID Ab (Log₁₀) Aβ₁₋₄₀ (pg/mL) (pg/mL) Aβ₁₋₄₀ (pg/mL) (n = 12) Week 16 Week 0 Week 16 Week16-Week0 P207 3.504 72.6 114.5 41.9 P105 3.164 53.5 75.1 21.6 P106 3.048 124.9 145.8 20.9 P109 2.778 492.9 1031.9 639.0 P108 2.622 29.3 44.4 15.1 P208 2.594 85.2 129.9 44.7 P206 2.462 90.2 102.1 11.9 P204 2.420 30.7 45.1 14.4 P205 1.989 77.7 72.0 −5.7 P107 1.790 147.0 92.7 −54.3 P209 1.467 58.6 87.7 29.1 P210 1.449 44.4 32.6 −11.8 Data in bold type have increased levels of Aβ₁₋₄₀ at week 16 after immunizations of UBI AD vaccine at weeks 0, 4 and 12.

TABLE 19 Mean Stimulation Indexes by Peripheral Blood Mononuclear Cells (PBMCs) from Patient Subjects Collected at Week 0 and Week 16 Upon Coculture with Various Aβ peptides Week 0 Week 16 Difference Paired t-test Peptide (SEQ ID NO:) mean (SD) mean (SD) mean (SD) p value Aβ₁₋₁₄ (SEQ ID NO: 4) 0.93 (0.36) 0.90 (0.22) −0.03 (0.39)   0.73 Aβ₁₋₁₆ (SEQ ID NO: 66) 0.92 (0.30) 0.98 (0.25) 0.06 (0.40) 0.54 Aβ₁₋₂₈ (SEQ ID NO: 3) 0.96 (0.30) 1.04 (0.34) 0.08 (0.56) 0.55 Aβ₁₇₋₄₂ (SEQ ID NO: 67) 0.96 (0.34) 1.04 (0.29) 0.08 (0.49) 0.47 Aβ₁₋₄₂ (SEQ ID NO: 1) 0.97 (0.38) 1.08 (0.49) 0.10 (0.53) 0.40 p1412* 0.87 (0.22) 0.99 (0.33) 0.11 (0.34) 0.18 PHA 28.73 (14.24) 27.75 (32.85) −0.98 (26.57) 0.87 *p1412 is a non-relevant control peptide. Statistical analyses: The differences in lymphocyte proliferations between week 0 and week 16 were examined by the paired t-test. The differences between the change of mean cytokine concentrations (week 16 vs. week 0) in response to Aβ peptides and controls were examined by paired Wilcoxon signed-rank test. Statistical significance levels were determined by 2-tailed tests (p < 0.05). R (version 2.13.0) was used for all statistical analyses.

TABLE 20 Mean Cytokine Concentrations (SD) (pg/mL)¹ Produced by Peripheral Blood Mononuclear Cells (PBMCs) from Patient Subjects Collected at Week 0 and Week 16 upon Coculture with Various Aβ peptides Peptide Th1 Th2 Both (SEQ ID IL-2 IFN-γ IL-6 IL-10 TNF-α NO:) Week 0 Week 16 Week 0 Week 16 Week 0 Week 16 Week 0 Week 16 Week 0 Week 16 Aβ₁₋₁₄ 31.06 31.20 13.52 16.07 31.34 50.74 5.67 5.62 36.82 39.84 (4) (32.48) (24.29) (16.88) (12.88) (29.67) (51.97) (1.56) (1.58) (62.84) (51.69) Aβ₁₋₁₆ 31.42 35.98 14.95 13.76 52.50 50.35 5.70 5.81 47.42 47.25 (66) (31.38) (23.93) (16.14) (14.19) (31.68) (42.63) (1.63) (1.78) (72.17) (69.73) Aβ₁₋₂₈ 36.73 40.55 15.99 20.68 31.74 42.27 5.61 6.17 41.59 51.20 (3) (34.29) (27.99) (23.57) (24.39) (25.38) (41.84) (1.52) (2.46) (66.53) (67.78) Aβ₁₇₋₄₂ 24.59 29.15 9.67 13.58 >44.55 46.90 5.34 5.56 15.60 24.78 (67) (−25.68) (21.17) (9.74) (15.63) (70.86)³ (51.30) (0.86) (1.54) (18.44) (39.26) Aβ₁₋₄₂ 23.06 27.34 13.42 >44.84 >141.25 >202.02 11.13 31.90 >31.63 >88.78⁶ (1) (17.65) (16.86) (16.12) (77.34) (130.11)⁴ (121.32)⁵ (22.68) (50.21) (71.46)³ (132.91) p1412 30.88 39.96 14.40 21.72 31.81 60.69 5.25 5.18 17.14 20.85 (27.42) (25.97) (18.39) (29.89) (52.12) (95.80) (0.64) (0.53) (23.50) (29.26) PHA 10.38⁷ 12.84⁷ >320.00 >318.91 >320.00 >320.00 173.83 >162.77 >313.01 >300.87 (11.34) (6.49) (0.00)² (4.77)² (0.00)² (0.00)² (84.75) (99.70) (30.48)² (46.51)² Cell control 33.36 38.83 13.81 17.84 45.86 65.31 5.88 5.73 44.32 46.72 (24.91) (33.08) (12.29) (18.24) (41.93) (76.54) (2.45) (1.59) (70.90) (67.76) ¹Quantifiable range of the assay is between 5 and 320 pg/mL. ²Concentrations of 90% or more subjects were above upper quantification limit (AQL), i.e., 320 pg/mL. ³One patient had an AQL value. ⁴Six patients had AQL values. ⁵Eight patients had AQL values. ⁶Four patients had AQL values. ⁷The lack of IL-2 production observed in response to PHA mitogen is consistent with findings reported by Katial et. Al, et al 1998 under similar experimental conditions. 

1. An Aβ peptide immunogen construct comprising the following formula: (N-terminal fragment of Aβ₁₋₄₂ peptide)-(A)o-(Th)-X wherein (N-terminal fragment of Aβ₁₋₄₂ peptide) is a B cell epitope from Aβ comprising about 10 to about 14 amino acid residues selected from the group consisting of SEQ ID NOs: 4, 5, and 6; each A is independently an amino acid or a linking group selected from the group consisting of an amino acid, Lys-, Gly-, Lys-Lys-Lys-, (α, ε-N)Lys, and ε-N-Lys-Lys-Lys-Lys (SEQ ID NOs: 32); each Th comprises an amino acid sequence that constitutes a helper T cell epitope selected from the group consisting of SEQ ID NOs: 34, 37, 38, 40 to 47 and functional immunological analogues thereof; X is an α-COOH or α-CONH2 of an amino acid; and o is from 0 to about
 4. 2. The Aβ peptide immunogen construct of claim 1, wherein the (N-terminal fragment of Aβ₁₋₄₂ peptide) is Aβ₁₋₁₄ (SEQ ID NO: 4).
 3. The Aβ peptide immunogen construct of claim 1, wherein A is ε-N-Lys-Lys-Lys-Lys (SEQ ID NOs: 32).
 4. The Aβ peptide immunogen construct of claim 1, wherein the Th epitope is SEQ ID NOs: 45 or
 46. 5. The Aβ peptide immunogen construct of claim 1, comprising the amino acid sequence of SEQ ID NOs: 48-65.
 6. The Aβ peptide immunogen construct of claim 1, consisting essentially of the amino acid sequences of SEQ ID NOs: 62-65.
 7. The Aβ peptide immunogen construct of claim 1 that is SEQ ID NOs: 62, 63, 64, and/or
 65. 8. A composition comprising the Aβ peptide immunogen construct of claim
 1. 9. A pharmaceutical composition comprising a. the Aβ peptide immunogen construct of claim 1; and b. a pharmaceutically acceptable delivery vehicle and/or adjuvant.
 10. An Alzheimer's Disease vaccine composition comprising a. the Aβ peptide immunogen construct of claim 1; and b. a pharmaceutically acceptable delivery vehicle and/or adjuvant.
 11. An Alzheimer's Disease vaccine composition comprising a. the Aβ peptide immunogen construct of claim 7; and b. a pharmaceutically acceptable delivery vehicle and/or adjuvant.
 12. The Alzheimer's Disease vaccine composition of claim 10, wherein the adjuvant in (b) is a mineral salt of Aluminum selected from the group consisting of alhydrogel (Al(OH)₃) or adjuphos (AlPO₄).
 13. The Alzheimer's Disease vaccine composition of claim 10, wherein the peptide antigen in (a) is mixed with an CpG oligodeoxynucleotide (ODN) to form a stabilized immunostimulatory complex.
 14. An isolated antibody or epitope-binding fragment thereof which binds to the (N-terminal fragment of Aβ₁₋₄₂ peptide) component of the Aβ peptide immunogen construct of claim
 1. 15. The isolated antibody or epitope-binding fragment thereof of claim 14, which specifically binds to Aβ₁₋₁₀ (SEQ ID NO: 6).
 16. The isolated antibody or epitope-binding fragment thereof of claim 14, bound to the Aβ peptide immunogen construct of claim
 1. 17. The isolated antibody or epitope-binding fragment thereof of claim 15, bound SEQ ID NO:
 6. 18. A composition comprising the isolated antibody or epitope-binding fragment thereof of claim
 14. 19. A method of reducing the severity or delaying onset of dementia in human patients comprising administering a vaccine formulation according to claim
 10. 20. The method of claim 19, wherein said vaccine formulation is administered in an aqueous solution comprising between 101 ug and 1000 ug per dose to patients at risk for, or with, AD. 